Transcript 5281 | MetamORF

Transcript

ID CARD

MetamORF ID

5281

ENST00000533037

Name

FIBP-211

Strand

Biotype

nonsense_mediated_decay

Start-end positions

65884009-65888490

CDS Start-stop positions

65885634-65888418

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

HGNC:3705

Aliases

ENSG00000172500,
FGFIBP, FIBP, HGNC:3705,
NCBI:9158, OFF:FIBP

Chr 11

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
287754	78	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	LCL
1440550	90	GTG ...	VNV ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative Downstream NMD sORF	hES, HFF
5283	99	GTG ...	VEP ...	Ribo-seq	GTG		15	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
5280	60	GTG ...	VRF ...	Ribo-seq	GTG		10	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, HEK293, HeLa, hES, MDA-MB-231, RPE-1, U2OS
2424425	93	CTG ...	LVN ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative Downstream NMD sORF	hES, HFF
1440548	84	GTG ...	VAA ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative Downstream NMD sORF	hES, HFF
287751	39	ATG ...	MSE ...	Ribo-seq	ATG		1	sORFs_org_Human	Downstream NMD sORF	LCL
909784	42	CAG ...	QYS ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
2424427	105	CTG ...	LSR ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa, hES, HFF
5277	48	CTG ...	LNQ ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, HeLa, hES, MDA-MB-231, RPE-1
3200639	54	GTC ...	VRD ...	Ribo-seq	GTC		1	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293
2317447	57	TTG ...	LWN ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa, MDA-MB-231

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