Transcript 4227 | MetamORF

Transcript

ID CARD

MetamORF ID

4227

ENST00000535723

Name

FEN1-203

Strand

Biotype

protein_coding

Start-end positions

61792951-61795856

CDS Start-stop positions

61795362-

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

HGNC:3650

Aliases

ENSG00000168496,
FEN-1, FEN1, HGNC:3650,
MF1, NCBI:2237, OFF:FEN1,
RAD2

Chr 11

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
286138	48	CTG ...	LLG ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231
908005	39	CAT ...	HDG ...	Ribo-seq	CAT	moderate	1	sORFs_org_Human	sORF	Jurkat
634957	42	GTG ...	VQT ...	Ribo-seq	GTG	weak	6	sORFs_org_Human	sORF	Blood, HEK293, HEK293T, HeLa, MDA-MB-231, THP-1
4237	45	CTG ...	LGP ...	Ribo-seq	CTG	moderate	10	sORFs_org_Human	sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, U2OS
286129	48	GTG ...	VGM ...	Ribo-seq	GTG	strong	9	sORFs_org_Human	sORF	BJ, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1, U2OS
1205689	45	CTG ...	LCC ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	sORF	HAP1, HEK293, HeLa
4231	138	ATG ...	MAS ...	Ribo-seq	ATG	moderate	18	sORFs_org_Human	sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
1317012	33	TTG ...	LPW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	sORF	HEK293
4226	147	ATG ...	MSL ...	Ribo-seq	ATG	weak	18	sORFs_org_Human	sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
4233	93	GTG ...	VSG ...	Ribo-seq	GTG	moderate	15	sORFs_org_Human	sORF	BJ, Blood, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, U2OS
4235	81	CTG ...	LRQ ...	Ribo-seq	CTG	moderate	14	sORFs_org_Human	sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, U2OS
286127	36	GTG ...	VLP ...	Ribo-seq	GTG	weak	5	sORFs_org_Human	sORF	Flp-In_T-REx-293, HAP1, HEK293, LCL, RPE-1
908003	69	CCT ...	PDG ...	Ribo-seq	CCT	moderate	1	sORFs_org_Human	sORF	Jurkat
528724	30	ATG ...	MRR ...	Ribo-seq	ATG	moderate	11	sORFs_org_Human	sORF	BJ, Blood, HEK293, HeLa, HFF, MDA-MB-231, U2OS
4229	141	TTG ...	LMA ...	Ribo-seq	TTG	weak	18	sORFs_org_Human	sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
286131	42	ATG ...	MCC ...	Ribo-seq	ATG	moderate	11	sORFs_org_Human	sORF	BJ, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1, U2OS
908001	30	TGC ...	CPG ...	Ribo-seq	TGC	moderate	1	sORFs_org_Human	sORF	Jurkat

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