Transcript 4251 | MetamORF

Transcript

ID CARD

MetamORF ID

4251

ENST00000535307

Name

FEN1-202

Strand

Biotype

protein_coding

Start-end positions

61795940-61797232

CDS Start-stop positions

-61796927

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

HGNC:3650

Aliases

ENSG00000168496,
FEN-1, FEN1, HGNC:3650,
MF1, NCBI:2237, OFF:FEN1,
RAD2

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1821284	99	CTG ...	LEP ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	sORF	HeLa
286156	36	CTG ...	LRS ...	Ribo-seq	CTG	weak	14	sORFs_org_Human	sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
286152	54	GTG ...	VVK ...	Ribo-seq	GTG	moderate	11	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
908023	63	CAA ...	QVP ...	Ribo-seq	CAA	moderate	1	sORFs_org_Human	sORF	Jurkat
407677	30	AGG ...	RCW ...	Ribo-seq	AGG	weak	1	sORFs_org_Human	sORF	HCT116
1821280	63	CTG ...	LRE ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	sORF	HeLa
1821282	111	ATG ...	MGR ...	Ribo-seq	ATG	strong	1	sORFs_org_Human	sORF	HeLa
4253	186	GTG ...	VRV ...	Ribo-seq	GTG	moderate	19	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1821278	66	CTG ...	LLR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	sORF	HeLa
4261	84	CTG ...	LCQ ...	Ribo-seq	CTG	moderate	16	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
407679	33	AGG ...	RSE ...	Ribo-seq	AGG	weak	1	sORFs_org_Human	sORF	HCT116
4259	102	TTG ...	LTP ...	Ribo-seq	TTG	moderate	17	sORFs_org_Human	sORF	BJ, Blood, HAP1, HCT116, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
4255	168	TTG ...	LGP ...	Ribo-seq	TTG	strong	19	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
908021	99	ACC ...	TPT ...	Ribo-seq	ACC	weak	1	sORFs_org_Human	sORF	Jurkat
908017	39	GAA ...	EAQ ...	Ribo-seq	GAA	moderate	1	sORFs_org_Human	sORF	Jurkat
4250	195	GTG ...	VTT ...	Ribo-seq	GTG	moderate	20	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
4257	153	CTG ...	LWT ...	Ribo-seq	CTG	moderate	18	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
528743	42	TTG ...	LAP ...	Ribo-seq	TTG	strong	9	sORFs_org_Human	sORF	BJ, Blood, HEK293, HeLa, Jurkat, MDA-MB-231, RPE-1, THP-1, U2OS
908013	198	GCA ...	AVT ...	Ribo-seq	GCA	moderate	1	sORFs_org_Human	sORF	Jurkat
4265	33	CTG ...	LRC ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	sORF	BJ, Blood, Brain, HEK293, HeLa, LCL, RPE-1, THP-1, U2OS
908015	144	TCA ...	SSR ...	Ribo-seq	TCA	moderate	1	sORFs_org_Human	sORF	Jurkat
908025	48	AGA ...	RKL ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	sORF	Jurkat
286154	51	GTG ...	VKS ...	Ribo-seq	GTG	moderate	9	sORFs_org_Human	sORF	BJ, Blood, HEK293, HEK293T, LCL, MDA-MB-231, RPE-1, U2OS
908019	123	TCG ...	SRR ...	Ribo-seq	TCG	moderate	1	sORFs_org_Human	sORF	Jurkat

Export data