Transcript 2981 | MetamORF

Transcript

ID CARD

MetamORF ID

2981

ENST00000526952

Name

FBXO3-204

Strand

Biotype

processed_transcript

Start-end positions

33763206-33772003

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

HGNC:13582

Aliases

ENSG00000110429,
FBA, FBX3, FBXO3,
HGNC:13582, NCBI:26273, OFF:FBXO3

Chr 11

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
9181	225	CTG ...	LWR ...	Ribo-seq	CTG		21	sORFs_org_Human	ncRNA sORF	Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
284127	87	TTG ...	LTI ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
284123	75	CTG ...	LLL ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
284129	33	TTG ...	LEI ...	Ribo-seq	TTG	strong	8	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
1047126	75	ATG ...	MSV ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, MDA-MB-231
284131	36	GTG ...	VLE ...	Ribo-seq	GTG	weak	8	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
284121	54	ATG ...	MIS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	ncRNA sORF	Blood, HeLa, LCL, MDA-MB-231
284134	39	GTG ...	VEK ...	Ribo-seq	GTG	strong	11	sORFs_org_Human	ncRNA sORF	Blood, Brain, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
2980	45	CTG ...	LWR ...	Ribo-seq	CTG		24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
1047128	90	CTG ...	LPA ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, MDA-MB-231
284125	78	ATG ...	MLL ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
101519	42	ATG ...	MIR ...	Ribo-seq	ATG	moderate	9	sORFs_org_Human	ncRNA sORF	Brain, HEK293, HeLa, LCL, MDA-MB-231

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