Transcript 4284 | MetamORF

Transcript

ID CARD

MetamORF ID

4284

ENST00000521849

Name

FADS2-209

Strand

Biotype

protein_coding

Start-end positions

61828280-61864221

CDS Start-stop positions

61828391-61863790

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

HGNC:3575

Aliases

D6D,
DES6, ENSG00000134824, FADS2,
FADSD6, HGNC:3575, LLCDL2,
NCBI:9415, OFF:FADS2, SLL0262,
TU13

Chr 11

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
916337	132	TTT ...	FTT ...	Ribo-seq	TTT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
916343	234	CCA ...	PTT ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
294293	75	GTG ...	VNW ...	Ribo-seq	GTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
102242	30	CTG ...	LTW ...	Ribo-seq	CTG	moderate	19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
294289	144	TTG ...	LTA ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
294297	168	CTG ...	LSF ...	Ribo-seq	CTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
916353	87	CTT ...	LST ...	Ribo-seq	CTT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
916335	147	TCA ...	SLT ...	Ribo-seq	TCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
908084	84	TTT ...	FTT ...	Ribo-seq	TTT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
916359	45	TCA ...	SGS ...	Ribo-seq	TCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
294299	156	TTG ...	LAM ...	Ribo-seq	TTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
294295	180	TTG ...	LHG ...	Ribo-seq	TTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
908086	60	TCC ...	SST ...	Ribo-seq	TCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
294305	42	TTG ...	LTR ...	Ribo-seq	TTG		12	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
286174	96	TTG ...	LTA ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
916357	60	TTT ...	FSS ...	Ribo-seq	TTT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
916345	225	TGT ...	CSS ...	Ribo-seq	TGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
634985	168	CTG ...	LGG ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, MDA-MB-231, RPE-1, THP-1
286176	51	ATG ...	MPS ...	Ribo-seq	ATG	weak	20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
4283	51	TTG ...	LVN ...	Ribo-seq	TTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
916339	108	TCC ...	SST ...	Ribo-seq	TCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
908082	99	TCA ...	SLT ...	Ribo-seq	TCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
916333	162	CCG ...	PTG ...	Ribo-seq	CCG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
294301	150	ATG ...	MAG ...	Ribo-seq	ATG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
916341	243	TGT ...	CSR ...	Ribo-seq	TGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
294291	78	TTG ...	LVN ...	Ribo-seq	TTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
528787	273	GTG ...	VQR ...	Ribo-seq	GTG		12	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Brain, HAP1, HEK293, hES, HFF, Jurkat, MDA-MB-231, RPE-1, THP-1, U2OS
908080	114	CCG ...	PTG ...	Ribo-seq	CCG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
4286	48	GTG ...	VNW ...	Ribo-seq	GTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
528785	153	CTG ...	LCS ...	Ribo-seq	CTG	weak	7	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, MDA-MB-231, RPE-1, THP-1, U2OS
908077	291	GCT ...	AGR ...	Ribo-seq	GCT		3	sORFs_org_Human	Alternative Overlapping sORF Upstream	HeLa, Jurkat, THP-1

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