Transcript 4274 | MetamORF

Transcript

ID CARD

MetamORF ID

4274

ENST00000539999

Name

FADS1-213

Strand

Biotype

protein_coding

Start-end positions

61803426-61810885

CDS Start-stop positions

-61810852

CDS Relative positions

Sequences

Transcript sequence

CTG ...

Genome browsers

UCSC

Gene

HGNC:3574

Aliases

D5D,
ENSG00000149485, FADS1, FADS6,
FADSD5, HGNC:3574, LLCDL1,
NCBI:3992, OFF:FADS1, TU12

Chr 11

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1725606	60	TTG ...	LGN ...	Ribo-seq	TTG	strong	2	sORFs_org_Human	sORF	Blood, MDA-MB-231
528761	81	TTG ...	LGP ...	Ribo-seq	TTG		9	sORFs_org_Human	sORF	BJ, Blood, HAP1, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
908041	42	TAT ...	YAV ...	Ribo-seq	TAT		1	sORFs_org_Human	sORF	Jurkat
407681	63	TGG ...	WET ...	Ribo-seq	TGG		3	sORFs_org_Human	sORF	HCT116, HEK293, Jurkat
4273	114	CTG ...	LDD ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	Blood, HEK293, THP-1
528767	153	TTG ...	LVE ...	Ribo-seq	TTG		6	sORFs_org_Human	sORF	Blood, HeLa, hES, RPE-1, THP-1, U2OS
528759	30	TTG ...	LLS ...	Ribo-seq	TTG		16	sORFs_org_Human	sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, Jurkat, MDA-MB-231, RPE-1, THP-1, U2OS
528765	150	GTG ...	VEP ...	Ribo-seq	GTG		5	sORFs_org_Human	sORF	Blood, HeLa, hES, THP-1, U2OS
528763	111	CTG ...	LLP ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	HeLa, hES, U2OS

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