Transcript 286165

Transcript

ID CARD

MetamORF ID

286165

ENST00000491310

Name

FADS1-209

Strand

Biotype

protein_coding

Start-end positions

61810973-61816778

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

HGNC:3574

Aliases

D5D,
ENSG00000149485, FADS1, FADS6,
FADSD5, HGNC:3574, LLCDL1,
NCBI:3992, OFF:FADS1, TU12

Chr 11

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
294284	216	ATG ...	MSS ...	Ribo-seq	ATG		3	sORFs_org_Human	sORF	HEK293T, HeLa, LCL
294282	174	ATG ...	MVQ ...	Ribo-seq	ATG		3	sORFs_org_Human	sORF	HEK293T, HeLa, LCL
286169	81	CTG ...	LAG ...	Ribo-seq	CTG	strong	8	sORFs_org_Human	sORF	Blood, HAP1, HeLa, LCL, MDA-MB-231
294278	144	TTG ...	LGR ...	Ribo-seq	TTG		4	sORFs_org_Human	sORF	HEK293T, HeLa, LCL
286164	60	TTG ...	LGT ...	Ribo-seq	TTG	strong	8	sORFs_org_Human	sORF	Blood, HAP1, HeLa, LCL, MDA-MB-231, U2OS
286167	66	ATG ...	MTL ...	Ribo-seq	ATG	moderate	9	sORFs_org_Human	sORF	Blood, HAP1, HeLa, hES, LCL, MDA-MB-231, U2OS
1731911	114	GTG ...	VRC ...	Ribo-seq	GTG		5	sORFs_org_Human	sORF	Blood, HeLa, MDA-MB-231
528773	60	TTG ...	LGR ...	Ribo-seq	TTG		1	sORFs_org_Human	sORF	HEK293T
294280	171	GTG ...	VQP ...	Ribo-seq	GTG		3	sORFs_org_Human	sORF	HEK293T, HeLa, LCL

Export data