Transcript 11296 | MetamORF

Transcript

ID CARD

MetamORF ID

11296

ENST00000267113

Name

ESYT1-201

Strand

Biotype

protein_coding

Start-end positions

56128267-56144041

CDS Start-stop positions

56128320-56143862

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

HGNC:29534

Aliases

ENSG00000139641,
ESYT1, FAM62A, HGNC:29534,
KIAA0747, MBC2, NCBI:23344,
OFF:ESYT1

Chr 12

ORFs

69 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1741942	210	GTG ...	VRS ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
300651	99	ATG ...	MDV ...	Ribo-seq	ATG	strong	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa, LCL, MDA-MB-231
308063	75	TTG ...	LKS ...	Ribo-seq	TTG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231
308055	126	GTG ...	VLG ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, LCL, MDA-MB-231
538416	156	CTG ...	LAP ...	Ribo-seq	CTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293T, hES, MDA-MB-231, RPE-1, THP-1, U2OS
1516016	174	GTG ...	VAQ ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ
308067	123	ATG ...	MVA ...	Ribo-seq	ATG		8	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HAP1, HEK293, HeLa, HFF, LCL, MDA-MB-231, U2OS
644936	45	TTG ...	LTV ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231, THP-1
308041	90	ATG ...	MHL ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231
1599139	75	GTG ...	VKS ...	Ribo-seq	GTG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, loayza_puch_2016, MDA-MB-231, RPE-1
1741951	120	TTG ...	LSG ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
1599141	99	ATG ...	MRP ...	Ribo-seq	ATG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, loayza_puch_2016
308043	84	TTG ...	LCV ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
2335027	87	GTG ...	VRI ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, hES, MDA-MB-231
1741929	39	TTG ...	LST ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
1741934	51	ATG ...	MLF ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
308051	138	CTG ...	LVV ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, hES, LCL, MDA-MB-231
300631	105	GTG ...	VLG ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, LCL, MDA-MB-231
300653	93	GTG ...	VIL ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa, LCL, MDA-MB-231
1598367	87	ATG ...	MRP ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, loayza_puch_2016, MDA-MB-231
308053	129	CTG ...	LVL ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, LCL, MDA-MB-231
308033	201	TTG ...	LWP ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
1736147	108	TTG ...	LSG ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
3230539	63	GTG ...	VWM ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
543010	57	TTG ...	LKW ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, hES, MDA-MB-231, RPE-1, U2OS
308049	42	ATG ...	MKN ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HFF, LCL, MDA-MB-231
300627	108	CTG ...	LVL ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, LCL, MDA-MB-231
300655	84	CTG ...	LIP ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa, LCL, MDA-MB-231
300657	75	ATG ...	MCH ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HeLa, LCL, MDA-MB-231
11295	51	ATG ...	MLP ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, HFF, MM1S, RPE-1, THP-1
1741917	132	CTG ...	LLG ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, hES, MDA-MB-231
3201763	66	TGT ...	CGR ...	Ribo-seq	TGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
1741922	129	CTG ...	LPS ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
538433	90	CTG ...	LST ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
3233947	84	GTG ...	VWM ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
308047	45	TTG ...	LMK ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
300621	99	ATG ...	MHL ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
543008	90	TTG ...	LCL ...	Ribo-seq	TTG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231, RPE-1, U2OS
300625	117	CTG ...	LVV ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231
1741946	120	ATG ...	MLL ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
300602	168	CTG ...	LCI ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
1741940	45	ATG ...	MIF ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1741925	84	CTG ...	LTF ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
1521089	90	CTG ...	LST ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood
300619	120	TTG ...	LRA ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
1741956	69	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	Blood
1741927	72	ATG ...	MWL ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
308037	144	CTG ...	LWL ...	Ribo-seq	CTG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, hES, LCL, MDA-MB-231
308061	48	TTG ...	LFG ...	Ribo-seq	TTG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231
1741938	66	TTG ...	LTR ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
543014	153	GTG ...	VKN ...	Ribo-seq	GTG		6	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HeLa, MDA-MB-231, U2OS
308045	51	GTG ...	VSL ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
308039	111	TTG ...	LRA ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
1598369	63	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	loayza_puch_2016
308057	108	GTG ...	VRI ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, hES, LCL
644932	36	CTG ...	LCQ ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, THP-1
1741944	198	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
3230541	57	ATG ...	MPH ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
308035	150	CTG ...	LKL ...	Ribo-seq	CTG		5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HeLa, hES, LCL, MDA-MB-231
1741920	132	TTG ...	LLP ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
1741954	75	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	Blood
11298	30	TTG ...	LSW ...	Ribo-seq	TTG	weak	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, MDA-MB-231, MM1S, THP-1, U2OS
451791	30	TTG ...	LPV ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HEK293, HEK293T, HeLa
308059	78	ATG ...	MPH ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, hES, HFF, LCL
1741948	108	CTG ...	LWE ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
308065	129	TTG ...	LFM ...	Ribo-seq	TTG		7	sORFs_org_Human	InCDS Overlapping sORF	BJ, HAP1, HeLa, HFF, LCL, MDA-MB-231, U2OS
300623	60	GTG ...	VSL ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
1736107	36	TTG ...	LST ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
644934	48	ATG ...	MLT ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, THP-1

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