Transcript 294982

Transcript

ID CARD

MetamORF ID

294982

ENST00000643516

Name

Strand

Biotype

protein_coding

Start-end positions

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

Genome browsers

Gene

HGNC:2073

Aliases

CLN2,
ENSG00000166340, HGNC:2073, NCBI:1200,
OFF:TPP1, SCAR7, TPP1

Chr 11

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
638557	129	GTG ...	VAV ...	Ribo-seq	GTG		11	sORFs_org_Human	sORF	BJ, Blood, Brain, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
638559	135	ATG ...	MPV ...	Ribo-seq	ATG		11	sORFs_org_Human	sORF	BJ, Blood, Brain, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
916674	117	TTC ...	FHR ...	Ribo-seq	TTC		1	sORFs_org_Human	sORF	Jurkat
295013	72	ATG ...	MWK ...	Ribo-seq	ATG		14	sORFs_org_Human	sORF	BJ, Blood, Brain, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
916668	30	GGG ...	GSH ...	Ribo-seq	GGG		1	sORFs_org_Human	sORF	Jurkat
638549	96	CTG ...	LMA ...	Ribo-seq	CTG		10	sORFs_org_Human	sORF	BJ, Blood, Brain, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1
638563	240	CTG ...	LPL ...	Ribo-seq	CTG		8	sORFs_org_Human	sORF	BJ, Blood, HeLa, MDA-MB-231, Monocyte, RPE-1, THP-1
294986	90	ATG ...	MST ...	Ribo-seq	ATG		12	sORFs_org_Human	sORF	BJ, Blood, Brain, HeLa, hES, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
916676	135	CCC ...	PHI ...	Ribo-seq	CCC		1	sORFs_org_Human	sORF	Jurkat
294981	57	TTG ...	LAF ...	Ribo-seq	TTG		12	sORFs_org_Human	sORF	BJ, Blood, Brain, HeLa, hES, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
294984	72	GTG ...	VAA ...	Ribo-seq	GTG		12	sORFs_org_Human	sORF	BJ, Blood, Brain, HeLa, hES, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
638561	231	ATG ...	MNA ...	Ribo-seq	ATG		6	sORFs_org_Human	sORF	BJ, Blood, HeLa, MDA-MB-231, RPE-1, THP-1
638551	105	CTG ...	LHF ...	Ribo-seq	CTG		11	sORFs_org_Human	sORF	BJ, Blood, Brain, HeLa, hES, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1
638555	123	GTG ...	VPT ...	Ribo-seq	GTG		12	sORFs_org_Human	sORF	BJ, Blood, Brain, HeLa, hES, HFF, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1
916661	84	ACA ...	TGS ...	Ribo-seq	ACA		1	sORFs_org_Human	sORF	Jurkat
916666	138	TCA ...	SMP ...	Ribo-seq	TCA		1	sORFs_org_Human	sORF	Jurkat
638576	96	ATG ...	MWT ...	Ribo-seq	ATG		7	sORFs_org_Human	sORF	Blood, HeLa, hES, MDA-MB-231, RPE-1, THP-1
638553	111	ATG ...	MWL ...	Ribo-seq	ATG		11	sORFs_org_Human	sORF	BJ, Blood, Brain, HeLa, hES, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1
638547	93	ATG ...	MAT ...	Ribo-seq	ATG		10	sORFs_org_Human	sORF	BJ, Blood, Brain, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1

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