Transcript 101985

Transcript

ID CARD

MetamORF ID

101985

ENST00000622257

Name

SELENOH-206

Strand

Biotype

protein_coding

Start-end positions

57741250-57743411

CDS Start-stop positions

57741596-57742217

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

HGNC:18251

Aliases

C11orf31,
ENSG00000211450, HGNC:18251, NCBI:280636,
OFF:SELENOH, SELENOH, SELH

Chr 11

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
409543	36	GGA ...	GGG ...	Ribo-seq	GGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
1821031	30	ATG ...	MRQ ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
634705	144	CTG ...	LTR ...	Ribo-seq	CTG		6	sORFs_org_Human	InCDS Overlapping sORF	Blood, hES, MDA-MB-231, RPE-1, THP-1
285348	84	GTG ...	VRS ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, LCL, MM1S, RPE-1
916206	111	GGC ...	GPR ...	Ribo-seq	GGC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1821023	150	CTG ...	LRA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative sORF Upstream	HeLa
1825284	120	TTG ...	LGR ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative Downstream sORF	HeLa
409541	72	GAA ...	EAR ...	Ribo-seq	GAA		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
101984	54	CTG ...	LHS ...	Ribo-seq	CTG	weak	26	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
407480	108	GTT ...	VAQ ...	Ribo-seq	GTT	moderate	2	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116, Jurkat
285346	36	TTG ...	LLS ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HEK293, HeLa, LCL, MM1S
1825286	39	ATG ...	MLS ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
285350	69	CTG ...	LGL ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, LCL
1821021	153	GTG ...	VLR ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative sORF Upstream	HeLa
1825288	36	CTG ...	LSF ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Downstream sORF	HeLa
907290	48	CTC ...	LPA ...	Ribo-seq	CTC	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
907292	90	GGC ...	GPR ...	Ribo-seq	GGC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
916203	93	CGC ...	RGG ...	Ribo-seq	CGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3307117	369	ATG ...	MAP ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
1821025	126	TTG ...	LRE ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative sORF Upstream	HeLa

Export data