Transcript 1895 | MetamORF

Transcript

ID CARD

MetamORF ID

1895

ENST00000621534

Name

PSMD13-215

Strand

Biotype

protein_coding

Start-end positions

236996-252984

CDS Start-stop positions

237050-252600

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

HGNC:9558

Aliases

ENSG00000185627,
HGNC:9558, NCBI:5719, OFF:PSMD13,
p40.5, PSMD13, Rpn9

Chr 11

ORFs

42 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1899	54	ATG ...	MLC ...	Ribo-seq	ATG		27	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
293128	54	CTG ...	LCG ...	Ribo-seq	CTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
406463	120	GTC ...	VVS ...	Ribo-seq	GTC		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
281996	30	TTG ...	LPK ...	Ribo-seq	TTG		20	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1
902951	99	AAC ...	NSN ...	Ribo-seq	AAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
902953	90	TGG ...	WSS ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
915832	42	GTC ...	VWR ...	Ribo-seq	GTC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
406456	132	GAA ...	EGR ...	Ribo-seq	GAA		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HCT116, HEK293, Jurkat
1897	48	TTG ...	LCR ...	Ribo-seq	TTG		30	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
100576	36	TTG ...	LTP ...	Ribo-seq	TTG	weak	13	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
902975	39	TTT ...	FHT ...	Ribo-seq	TTT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
282007	36	CTG ...	LSS ...	Ribo-seq	CTG	weak	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293T, HeLa, LCL, MDA-MB-231, THP-1
293136	36	ATG ...	MKD ...	Ribo-seq	ATG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
406465	39	TGG ...	WAV ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
633300	36	ATG ...	MLK ...	Ribo-seq	ATG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HEK293, HeLa, MDA-MB-231, MM1S, RPE-1, THP-1
281994	30	GTG ...	VLC ...	Ribo-seq	GTG	weak	16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HFF, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
915828	126	GAA ...	EGR ...	Ribo-seq	GAA		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
902956	99	GTA ...	VNT ...	Ribo-seq	GTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
100574	33	TTG ...	LKK ...	Ribo-seq	TTG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1
281990	159	CTG ...	LCR ...	Ribo-seq	CTG		14	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HEK293, HEK293T, HeLa, hES, LCL, MM1S, RPE-1, THP-1, U2OS
281998	42	ATG ...	MWL ...	Ribo-seq	ATG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1
1093993	36	TTG ...	LKK ...	Ribo-seq	TTG	weak	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HFF, MDA-MB-231, RPE-1
3201077	87	AGC ...	SRA ...	Ribo-seq	AGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
902966	60	ACA ...	TKM ...	Ribo-seq	ACA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
100572	42	TTG ...	LKM ...	Ribo-seq	TTG	weak	12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1
293134	42	ATG ...	MWL ...	Ribo-seq	ATG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1
1093991	60	CTG ...	LPI ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, HFF, MDA-MB-231, RPE-1
7876	66	GTG ...	VAP ...	Ribo-seq	GTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1
1818581	57	CTG ...	LVP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
100568	30	GTG ...	VAS ...	Ribo-seq	GTG	strong	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1
915830	63	GCA ...	APS ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3201075	90	TAC ...	YSR ...	Ribo-seq	TAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
282003	33	GTG ...	VLT ...	Ribo-seq	GTG		21	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
282000	111	ATG ...	MIS ...	Ribo-seq	ATG		22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
915844	33	AAA ...	KTL ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
282005	30	TTG ...	LTS ...	Ribo-seq	TTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HCT116, HEK293, HEK293T, HeLa, hES, Jurkat, LCL, MM1S, RPE-1, U2OS
1894	54	TTG ...	LIL ...	Ribo-seq	TTG		29	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
902962	48	CCA ...	PRV ...	Ribo-seq	CCA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
902964	69	CGT ...	RPT ...	Ribo-seq	CGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
406461	33	TGT ...	CGS ...	Ribo-seq	TGT	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
902960	93	ACT ...	TIK ...	Ribo-seq	ACT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
902968	48	TGC ...	CGF ...	Ribo-seq	TGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat

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