Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

1216

ID

ENST00000620315

Name

DDX21-202

Strand

+

Biotype

protein_coding

Start-end positions

68956440-68985067

CDS Start-stop positions

68959923-68982812

CDS Relative positions

-

Sequences

Transcript sequence

GGG ...

Gene

ID

HGNC:2744

Aliases

DDX21,
ENSG00000165732, GURDB, HGNC:2744,
NCBI:9188, OFF:DDX21, RH-II/GU


Chr 10

ORFs

110 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

3199361 117

TGT ...

CGS ...

Ribo-seq
TGT 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293
895546 51

TCG ...

SYQ ...

Ribo-seq
TCG moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
95179 96

ATG ...

MSS ...

Ribo-seq
ATG moderate 26 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
406074 69

ACA ...

TGR ...

Ribo-seq
ACA 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116
1218 84

ATG ...

MGN ...

Ribo-seq
ATG 28 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HCT116, HEK293,
HEK293T, HeLa, hES,
HFF, Jurkat, LCL,
MDA-MB-231, RPE-1, THP-1,
U2OS
404431 39

AGT ...

SGR ...

Ribo-seq
AGT 3 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116, HEK293, Jurkat
895583 30

TGT ...

CCC ...

Ribo-seq
TGT weak 2 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293, Jurkat
95144 45

ATG ...

MGN ...

Ribo-seq
ATG 22 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, Jurkat,
LCL, MDA-MB-231, RPE-1,
U2OS
95142 57

TTG ...

LRN ...

Ribo-seq
TTG 22 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
loayza_puch_2016, MDA-MB-231, RPE-1,
THP-1
630368 33

GTG ...

VFA ...

Ribo-seq
GTG weak 13 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, MDA-MB-231, RPE-1,
THP-1
901389 78

AAC ...

NCK ...

Ribo-seq
AAC 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
895521 39

GAT ...

DSR ...

Ribo-seq
GAT moderate 1 sORFs_org_Human
    Alternative
    sORF
    Upstream
Jurkat
3199364 78

CAA ...

QLK ...

Ribo-seq
CAA moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293
404440 45

GGG ...

GCA ...

Ribo-seq
GGG weak 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HCT116
95191 51

ATG ...

MVV ...

Ribo-seq
ATG strong 16 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
RPE-1, THP-1
3199350 96

AAA ...

KDI ...

Ribo-seq
AAA strong 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293
95173 54

GTG ...

VPL ...

Ribo-seq
GTG weak 24 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
LCL, MDA-MB-231, MM1S,
Monocyte, RPE-1, THP-1,
U2OS
95162 57

ATG ...

MKW ...

Ribo-seq
ATG weak 28 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, Jurkat,
LCL, MDA-MB-231, MM1S,
Monocyte, RPE-1, U2OS
95156 48

TTG ...

LEH ...

Ribo-seq
TTG moderate 22 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, Monocyte,
RPE-1
895523 57

CAA ...

QKR ...

Ribo-seq
CAA moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
95183 48

GTG ...

VKP ...

Ribo-seq
GTG weak 27 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
95211 54

ATG ...

MLG ...

Ribo-seq
ATG moderate 23 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
97172 45

GTG ...

VEL ...

Ribo-seq
GTG 6 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Flp-In_T-REx-293, HEK293, HeLa,
LCL
3199359 84

TTC ...

FID ...

Ribo-seq
TTC moderate 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293
95209 75

TTG ...

LKC ...

Ribo-seq
TTG weak 22 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
MM1S, Monocyte, RPE-1,
THP-1
901397 48

GTC ...

VSG ...

Ribo-seq
GTC 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
97170 48

ATG ...

MVE ...

Ribo-seq
ATG 6 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, HEK293T, HeLa,
LCL
95148 84

GTG ...

VTS ...

Ribo-seq
GTG 14 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, RPE-1
95219 195

ATG ...

MEA ...

Ribo-seq
ATG strong 19 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
RPE-1, U2OS
895579 39

TCC ...

STE ...

Ribo-seq
TCC weak 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
95199 57

CTG ...

LEG ...

Ribo-seq
CTG strong 14 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HEK293T, HeLa, hES,
LCL, MDA-MB-231, MM1S,
RPE-1
95215 150

CTG ...

LAA ...

Ribo-seq
CTG strong 20 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, hES, LCL,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
95158 69

ATG ...

MLS ...

Ribo-seq
ATG moderate 29 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
Jurkat, LCL, MDA-MB-231,
MM1S, Monocyte, RPE-1,
THP-1, U2OS
895577 33

ACA ...

TFH ...

Ribo-seq
ACA moderate 2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, Jurkat
1215 96

TTG ...

LRN ...

Ribo-seq
TTG 26 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, Monocyte,
RPE-1, THP-1, U2OS
95187 54

ATG ...

MLS ...

Ribo-seq
ATG moderate 21 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, MDA-MB-231,
Monocyte, RPE-1, THP-1
3199354 72

ATC ...

IKD ...

Ribo-seq
ATC moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293
1402533 30

TTG ...

LLA ...

Ribo-seq
TTG moderate 2 sORFs_org_Human
    sORF
    Upstream
BJ, HEK293
1402531 54

TTG ...

LDL ...

Ribo-seq
TTG strong 2 sORFs_org_Human
    sORF
    Upstream
HEK293, HeLa
95217 240

CTG ...

LWP ...

Ribo-seq
CTG weak 20 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
BJ, Blood, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1, U2OS
1226 72

ATG ...

MPS ...

Ribo-seq
ATG 20 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1
901405 66

TCA ...

SGF ...

Ribo-seq
TCA 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
95189 39

ATG ...

MET ...

Ribo-seq
ATG moderate 20 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
MDA-MB-231, Monocyte, RPE-1
404442 39

GCA ...

ASA ...

Ribo-seq
GCA weak 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HCT116
895529 99

AGC ...

SKD ...

Ribo-seq
AGC moderate 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
895555 72

ACA ...

TIP ...

Ribo-seq
ACA moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
895519 30

AGC ...

SQN ...

Ribo-seq
AGC moderate 1 sORFs_org_Human
    Alternative
    sORF
    Upstream
Jurkat
895575 54

CTT ...

LAW ...

Ribo-seq
CTT strong 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
95203 81

CTG ...

LLL ...

Ribo-seq
CTG 11 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, LCL, Monocyte,
RPE-1
404433 30

GAT ...

DFK ...

Ribo-seq
GAT 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116
895559 30

TTC ...

FCN ...

Ribo-seq
TTC weak 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
95205 39

CTG ...

LPL ...

Ribo-seq
CTG weak 18 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, MDA-MB-231,
RPE-1, U2OS
895538 60

TGG ...

WLV ...

Ribo-seq
TGG 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
895540 30

TGG ...

WWN ...

Ribo-seq
TGG 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
95195 57

CTG ...

LRL ...

Ribo-seq
CTG 14 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, LCL, RPE-1,
THP-1
274878 75

GTG ...

VAT ...

Ribo-seq
GTG strong 13 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, hES, HFF,
LCL, MDA-MB-231, RPE-1
895567 123

GGA ...

GLR ...

Ribo-seq
GGA moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
1816194 33

ATG ...

MWS ...

Ribo-seq
ATG weak 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
95136 57

CTG ...

LNR ...

Ribo-seq
CTG moderate 23 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HEK293T, HeLa,
hES, HFF, LCL,
MDA-MB-231, MM1S, RPE-1,
U2OS
95166 48

CTG ...

LQL ...

Ribo-seq
CTG weak 17 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HEK293T, HeLa,
hES, MDA-MB-231, RPE-1,
THP-1
95201 87

GTG ...

VHL ...

Ribo-seq
GTG 11 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, LCL, Monocyte,
RPE-1
895557 57

TGC ...

CFF ...

Ribo-seq
TGC weak 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
95154 60

TTG ...

LIS ...

Ribo-seq
TTG moderate 24 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, Monocyte,
RPE-1, THP-1
95175 48

CTG ...

LDS ...

Ribo-seq
CTG moderate 23 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, MM1S, Monocyte,
RPE-1, THP-1, U2OS
95140 33

CTG ...

LGR ...

Ribo-seq
CTG strong 20 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
RPE-1, THP-1, U2OS
95207 54

CTG ...

LWK ...

Ribo-seq
CTG moderate 15 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HEK293T, HeLa, hES,
LCL, MDA-MB-231, RPE-1,
THP-1
95132 33

ATG ...

MEK ...

Ribo-seq
ATG moderate 20 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
97159 60

CTG ...

LFS ...

Ribo-seq
CTG moderate 25 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
Monocyte, RPE-1, THP-1
895565 51

CCA ...

PLD ...

Ribo-seq
CCA moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
95213 264

ATG ...

MIH ...

Ribo-seq
ATG moderate 20 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
BJ, Blood, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1, U2OS
895536 48

GTC ...

VSG ...

Ribo-seq
GTC 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
274839 30

CTG ...

LPV ...

Ribo-seq
CTG moderate 18 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
hES, HFF, LCL,
MDA-MB-231, RPE-1, U2OS
895573 57

TCA ...

SSF ...

Ribo-seq
TCA weak 2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, Jurkat
95138 54

TTG ...

LHR ...

Ribo-seq
TTG weak 25 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
95164 78

CTG ...

LKT ...

Ribo-seq
CTG moderate 18 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HEK293T, HeLa,
hES, MDA-MB-231, Monocyte,
RPE-1, THP-1
95160 66

TTG ...

LSW ...

Ribo-seq
TTG moderate 28 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, MM1S, Monocyte,
RPE-1, THP-1, U2OS
404438 54

GAA ...

EGR ...

Ribo-seq
GAA moderate 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HCT116
901399 30

TGG ...

WWN ...

Ribo-seq
TGG 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
274837 36

GTG ...

VKL ...

Ribo-seq
GTG weak 18 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
hES, HFF, LCL,
MDA-MB-231, RPE-1, U2OS
895587 87

TAT ...

YFR ...

Ribo-seq
TAT 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
95127 39

TTG ...

LKR ...

Ribo-seq
TTG weak 13 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HEK293T, hES, MDA-MB-231,
Monocyte, RPE-1
895563 42

CTT ...

LAL ...

Ribo-seq
CTT moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
1222 45

CTG ...

LRL ...

Ribo-seq
CTG 20 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
RPE-1, THP-1
895525 48

AAG ...

KRS ...

Ribo-seq
AAG moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
895544 45

GAA ...

EHQ ...

Ribo-seq
GAA weak 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
895569 108

CAG ...

QLL ...

Ribo-seq
CAG weak 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
95134 72

ATG ...

MDF ...

Ribo-seq
ATG strong 24 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
U2OS
895532 39

AAC ...

NCK ...

Ribo-seq
AAC 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
895571 69

AAG ...

KDA ...

Ribo-seq
AAG strong 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
95181 78

GTG ...

VVI ...

Ribo-seq
GTG strong 26 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
95152 66

ATG ...

MGL ...

Ribo-seq
ATG strong 24 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, Monocyte,
RPE-1, THP-1
404444 246

AGC ...

SSL ...

Ribo-seq
AGC moderate 1 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
HCT116
95197 51

TTG ...

LIW ...

Ribo-seq
TTG 11 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, HeLa, hES,
LCL, RPE-1
895542 63

GGA ...

GLI ...

Ribo-seq
GGA moderate 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
97161 30

ATG ...

MTF ...

Ribo-seq
ATG moderate 13 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, hES, MDA-MB-231,
Monocyte, RPE-1, THP-1
95193 42

TTG ...

LEF ...

Ribo-seq
TTG strong 17 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
RPE-1, THP-1
895534 90

ACT ...

TSV ...

Ribo-seq
ACT 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
1220 39

TTG ...

LFL ...

Ribo-seq
TTG 22 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
95146 33

TTG ...

LHL ...

Ribo-seq
TTG weak 27 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
Monocyte, RPE-1, U2OS
3199797 48

CAA ...

QRC ...

Ribo-seq
CAA 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293
1224 39

TTG ...

LIW ...

Ribo-seq
TTG 20 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
RPE-1, THP-1
895548 33

ACA ...

TEW ...

Ribo-seq
ACA moderate 2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, Jurkat
901403 60

AGC ...

SRM ...

Ribo-seq
AGC 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
406078 33

GAT ...

DFK ...

Ribo-seq
GAT 2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116, Jurkat
895585 57

GAG ...

ELW ...

Ribo-seq
GAG moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
95177 102

TTG ...

LGM ...

Ribo-seq
TTG moderate 26 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
895527 33

AAA ...

KMT ...

Ribo-seq
AAA weak 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
406076 42

AGT ...

SGR ...

Ribo-seq
AGT 3 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116, HEK293, Jurkat
95168 30

TTG ...

LVK ...

Ribo-seq
TTG moderate 24 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
hES, HFF, LCL,
MDA-MB-231, Monocyte, RPE-1,
THP-1, U2OS
95150 39

TTG ...

LFL ...

Ribo-seq
TTG 24 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HEK293T, HeLa, hES,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS