Transcript 106411

Transcript

ID CARD

MetamORF ID

106411

ENST00000620255

Name

EMG1-204

Strand

Biotype

retained_intron

Start-end positions

6970935-6974901

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

HGNC:16912

Aliases

C2F,
EMG1, ENSG00000126749, Grcc2f,
HGNC:16912, NCBI:10436, NEP1,
OFF:EMG1

Chr 12

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
410328	57	GAG ...	EAV ...	Ribo-seq	GAG		1	sORFs_org_Human	Intronic sORF	HCT116
106415	66	GTG ...	VNE ...	Ribo-seq	GTG	weak	21	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
919148	54	GCC ...	AVG ...	Ribo-seq	GCC		1	sORFs_org_Human	Intronic sORF	Jurkat
297120	42	TTG ...	LWC ...	Ribo-seq	TTG		7	sORFs_org_Human	Intronic sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, RPE-1
106421	30	ATG ...	MLC ...	Ribo-seq	ATG	moderate	16	sORFs_org_Human	Intronic sORF	Blood, guo_2014, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1
1442752	96	GTG ...	VVL ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	HeLa
919146	129	GCA ...	AGN ...	Ribo-seq	GCA		1	sORFs_org_Human	Intronic sORF	Jurkat
919144	57	TGC ...	CSA ...	Ribo-seq	TGC	moderate	2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
106413	81	ATG ...	MDS ...	Ribo-seq	ATG		23	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, HFF, Jurkat, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
410330	102	CTT ...	LIV ...	Ribo-seq	CTT		1	sORFs_org_Human	Intronic sORF	HCT116
919142	33	GGG ...	GML ...	Ribo-seq	GGG	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
106410	84	GTG ...	VMD ...	Ribo-seq	GTG		24	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
106419	63	CTG ...	LGC ...	Ribo-seq	CTG	strong	19	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
106417	54	GTG ...	VGS ...	Ribo-seq	GTG	strong	21	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
297118	156	CTG ...	LPP ...	Ribo-seq	CTG		7	sORFs_org_Human	Intronic sORF	HEK293, HeLa, HFF, LCL, MM1S
919140	168	GAC ...	DWD ...	Ribo-seq	GAC		1	sORFs_org_Human	Intronic sORF	Jurkat

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