Transcript 6343 | MetamORF

Transcript

ID CARD

MetamORF ID

6343

ENST00000615667

Name

YAP1-210

Strand

Biotype

protein_coding

Start-end positions

102110461-102233423

CDS Start-stop positions

102110849-102229940

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

HGNC:16262

Aliases

ENSG00000137693,
HGNC:16262, NCBI:10413, OFF:YAP1,
YAP1, YAP65

Chr 11

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1509328	78	TTG ...	LRY ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
1048555	45	CTG ...	LGQ ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, HFF
1509318	153	TTG ...	LEG ...	Ribo-seq	TTG	strong	6	sORFs_org_Human	Alternative sORF Upstream	BJ, HeLa, hES, RPE-1
1509350	36	ATG ...	MTW ...	Ribo-seq	ATG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, hES, MDA-MB-231, RPE-1
1509322	78	GTG ...	VEP ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	Alternative sORF Upstream	BJ, HeLa, hES, RPE-1
1823511	69	TTG ...	LPS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1048553	57	TTG ...	LKP ...	Ribo-seq	TTG	moderate	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, HFF, MDA-MB-231
1509348	48	CTG ...	LTS ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, hES, HFF, MDA-MB-231, RPE-1
6342	30	GTG ...	VSL ...	Ribo-seq	GTG	moderate	13	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, MDA-MB-231, RPE-1, U2OS
1509344	114	GTG ...	VIL ...	Ribo-seq	GTG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, hES, MDA-MB-231, RPE-1
1509339	51	ATG ...	MVG ...	Ribo-seq	ATG	strong	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, HFF, MDA-MB-231, RPE-1
1509332	66	ATG ...	MMY ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa
2320944	51	ATG ...	MGT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, RPE-1
1509326	126	CTG ...	LAQ ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, hES, MDA-MB-231, RPE-1
1048551	75	GTG ...	VAA ...	Ribo-seq	GTG	moderate	12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1823515	45	CTG ...	LAQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1509320	117	GTG ...	VPR ...	Ribo-seq	GTG	weak	6	sORFs_org_Human	Alternative sORF Upstream	BJ, HeLa, hES, RPE-1
408783	39	CGG ...	RDV ...	Ribo-seq	CGG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
408785	66	CAG ...	QTT ...	Ribo-seq	CAG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
1823508	36	ATG ...	MWT ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, hES
408781	75	GCT ...	AVP ...	Ribo-seq	GCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
1823513	57	TTG ...	LFL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1509324	33	ATG ...	MRG ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	Alternative sORF Upstream	BJ, hES, HFF, MDA-MB-231, RPE-1
912563	177	GCT ...	AVR ...	Ribo-seq	GCT	moderate	2	sORFs_org_Human	Alternative sORF Upstream	Breast, Jurkat
1509334	63	ATG ...	MYL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
408779	225	AAA ...	KKF ...	Ribo-seq	AAA	moderate	1	sORFs_org_Human	sORF Upstream	HCT116
1509336	99	ATG ...	MAG ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, hES, MDA-MB-231, RPE-1
1509341	48	GTG ...	VGL ...	Ribo-seq	GTG	strong	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, hES, MDA-MB-231, RPE-1
532966	108	ATG ...	MAG ...	Ribo-seq	ATG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, hES, MDA-MB-231, RPE-1, U2OS
3200869	219	TGG ...	WIP ...	Ribo-seq	TGG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
1509330	69	CTG ...	LMM ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa

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