Transcript 3085 | MetamORF

Transcript

ID CARD

MetamORF ID

3085

ENST00000615292

Name

NAT10-210

Strand

Biotype

protein_coding

Start-end positions

34113803-34146903

CDS Start-stop positions

34113803-34143524

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

HGNC:29830

Aliases

ENSG00000135372,
FLJ10774, FLJ12179, hALP,
HGNC:29830, KIAA1709, Kre33,
NAT10, NCBI:55226, NET43,
OFF:NAT10

Chr 11

ORFs

71 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3095	60	GTG ...	VVC ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231, RPE-1
1724200	57	CTG ...	LKF ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
7965	108	TTG ...	LMT ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
2326545	51	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
284218	84	TTG ...	LLP ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231, RPE-1
284241	54	CTG ...	LET ...	Ribo-seq	CTG		8	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231
905841	51	TCA ...	SAA ...	Ribo-seq	TCA	strong	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2326547	168	TTG ...	LVV ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2053454	63	TTG ...	LVV ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231, RPE-1
1731105	135	TTG ...	LLF ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
905839	57	GCT ...	ANS ...	Ribo-seq	GCT	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1505034	63	ATG ...	MRF ...	Ribo-seq	ATG	weak	3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
284247	72	ATG ...	MKF ...	Ribo-seq	ATG	weak	4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, LCL, RPE-1
3089	30	GTG ...	VCW ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MM1S
284220	66	CTG ...	LIT ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231, RPE-1
2312838	102	ATG ...	MAA ...	Ribo-seq	ATG	strong	2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
284249	45	ATG ...	MKQ ...	Ribo-seq	ATG	weak	5	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231
2326537	249	ATG ...	MLI ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
2688633	36	CTG ...	LGE ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Downstream Overlapping sORF	RPE-1
2312811	78	TTG ...	LMT ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
2312823	36	ATG ...	MRA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
2312813	75	ATG ...	MTS ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
905845	54	TGG ...	WKR ...	Ribo-seq	TGG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3087	36	CTG ...	LWV ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, RPE-1
284232	45	TTG ...	LPQ ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HeLa, LCL, MDA-MB-231
284222	45	TTG ...	LNL ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
905849	30	AGG ...	RTC ...	Ribo-seq	AGG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
293259	114	TTG ...	LLP ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
284226	36	ATG ...	MYF ...	Ribo-seq	ATG		9	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231
1724202	93	GTG ...	VLC ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1205073	42	CTG ...	LPN ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, hES, MDA-MB-231
905835	105	TGG ...	WPL ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
7967	105	ATG ...	MTS ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
284234	96	ATG ...	MLI ...	Ribo-seq	ATG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231
1205071	51	ATG ...	MRG ...	Ribo-seq	ATG	weak	8	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
2312815	39	TTG ...	LPP ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
905847	36	CCC ...	PGR ...	Ribo-seq	CCC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1208202	69	TTG ...	LYL ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, MDA-MB-231
1136629	30	TTG ...	LLF ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, MDA-MB-231, RPE-1
284239	48	GTG ...	VEG ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231, RPE-1
284228	42	ATG ...	MTC ...	Ribo-seq	ATG	weak	6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231
7969	69	TTG ...	LPP ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
2326531	78	TTG ...	LAP ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231, RPE-1
2326541	72	ATG ...	MPF ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
284230	54	GTG ...	VPG ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231
2312842	66	CTG ...	LSA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2548115	147	ATG ...	MIS ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
905851	33	ATA ...	IWW ...	Ribo-seq	ATA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2326543	54	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
293261	96	CTG ...	LIT ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
293263	75	TTG ...	LNL ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, LCL, MDA-MB-231
527382	30	TTG ...	LRH ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	U2OS
407187	54	AAG ...	KNR ...	Ribo-seq	AAG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HCT116
284251	33	GTG ...	VGT ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, hES, LCL, MDA-MB-231
293265	57	ATG ...	MYF ...	Ribo-seq	ATG		10	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
284245	48	CTG ...	LWT ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, LCL, MDA-MB-231
284224	39	TTG ...	LYL ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
3103	57	TTG ...	LKN ...	Ribo-seq	TTG	moderate	21	sORFs_org_Human	Alternative Downstream sORF	BJ, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
2326549	165	GTG ...	VVC ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
284237	51	CTG ...	LVE ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231, RPE-1
2326533	66	TTG ...	LFS ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231, RPE-1
2312831	33	TTG ...	LKG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2326535	42	ATG ...	MAM ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1724218	51	TTG ...	LRS ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
3084	33	ATG ...	MRV ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL
284243	66	TTG ...	LAC ...	Ribo-seq	TTG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
2326553	153	GTG ...	VEG ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1724204	66	ATG ...	MKA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
2326551	156	CTG ...	LVE ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2326539	210	CTG ...	LKF ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
293268	96	CTG ...	LRL ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL, MDA-MB-231

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