Transcript 7629 | MetamORF

Transcript

ID CARD

MetamORF ID

7629

ENST00000614668

Name

HYOU1-218

Strand

Biotype

protein_coding

Start-end positions

119044191-119057194

CDS Start-stop positions

119045468-119056160

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

HGNC:16931

Aliases

ENSG00000149428,
Grp170, HGNC:16931, HSP12A,
HYOU1, NCBI:10525, OFF:HYOU1,
ORP150

Chr 11

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2687291	39	GTG ...	VRE ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative sORF Upstream	MM1S, RPE-1
913793	42	TCC ...	SST ...	Ribo-seq	TCC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
913797	57	CTA ...	LRY ...	Ribo-seq	CTA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1824045	75	TTG ...	LPK ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
915352	69	GAG ...	EAE ...	Ribo-seq	GAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
913799	36	CAA ...	QTW ...	Ribo-seq	CAA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
292496	48	TTG ...	LGL ...	Ribo-seq	TTG		22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
913791	219	ACA ...	TEA ...	Ribo-seq	ACA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
291070	63	TTG ...	LGL ...	Ribo-seq	TTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HEK293T, HeLa, hES, LCL, MM1S, RPE-1, THP-1, U2OS
409051	78	AAG ...	KLG ...	Ribo-seq	AAG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	BJ, HCT116
7628	111	ATG ...	MKD ...	Ribo-seq	ATG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1301743	72	GGA ...	GGR ...	Ribo-seq	GGA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	BJ
2687293	42	CTG ...	LVR ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative sORF Upstream	hES, MM1S, RPE-1
291072	66	CTG ...	LLG ...	Ribo-seq	CTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HEK293T, HeLa, hES, LCL, MM1S, RPE-1, THP-1, U2OS
291066	36	TTG ...	LSN ...	Ribo-seq	TTG	weak	19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
913803	84	GAG ...	EAE ...	Ribo-seq	GAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
913795	39	ACG ...	TLL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
291068	30	CTG ...	LCS ...	Ribo-seq	CTG	weak	22	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
292498	51	CTG ...	LLG ...	Ribo-seq	CTG		22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
915350	33	TGT ...	CAL ...	Ribo-seq	TGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
291064	39	ATG ...	MKD ...	Ribo-seq	ATG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS

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