Transcript 2526 | MetamORF

Transcript

ID CARD

MetamORF ID

2526

ENST00000611268

Name

TMEM41B-207

Strand

Biotype

protein_coding

Start-end positions

9280657-9314567

CDS Start-stop positions

9283424-9314441

CDS Relative positions

Sequences

Transcript sequence

TCG ...

Genome browsers

UCSC

Gene

HGNC:28948

Aliases

ENSG00000166471,
HGNC:28948, KIAA0033, NCBI:440026,
OFF:TMEM41B, TMEM41B

Chr 11

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
904167	87	CGC ...	RSP ...	Ribo-seq	CGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
282999	87	CTG ...	LEL ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
1733102	90	TTG ...	LLH ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, MDA-MB-231
526922	30	GTG ...	VRR ...	Ribo-seq	GTG		5	sORFs_org_Human	sORF Upstream	BJ, HeLa, MM1S, RPE-1, U2OS
904161	45	AGT ...	STC ...	Ribo-seq	AGT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
3199957	30	AGT ...	SGS ...	Ribo-seq	AGT	strong	1	sORFs_org_Human	Alternative sORF Upstream	HEK293
2803472	114	CTG ...	LLY ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	RPE-1
1819241	42	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
2311046	36	TTG ...	LVP ...	Ribo-seq	TTG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, MDA-MB-231, RPE-1
2955126	63	TTG ...	LLC ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	hES
2803477	72	CTG ...	LQL ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	hES, RPE-1
295766	111	GTG ...	VFW ...	Ribo-seq	GTG		12	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
526918	174	TTG ...	LFR ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HAP1, HeLa, MDA-MB-231, RPE-1, U2OS
1049871	66	CTG ...	LQL ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, MDA-MB-231, RPE-1
484029	39	CTG ...	LAA ...	Ribo-seq	CTG		8	sORFs_org_Human	InCDS Overlapping sORF	BJ, guo_2014, HEK293, HEK293T, HeLa, MDA-MB-231, THP-1
1733107	114	CTG ...	LDQ ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, RPE-1
904163	60	CAC ...	HLL ...	Ribo-seq	CAC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
406737	123	GGC ...	GER ...	Ribo-seq	GGC		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, HEK293, HeLa, Jurkat, THP-1
2525	63	TTG ...	LLF ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, MDA-MB-231
1733104	57	TTG ...	LLC ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, hES, MDA-MB-231, RPE-1
904172	129	AGC ...	SHG ...	Ribo-seq	AGC		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
904165	123	AAG ...	KLD ...	Ribo-seq	AAG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1723207	30	TTG ...	LGD ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, MDA-MB-231, RPE-1
904169	297	GAG ...	ESP ...	Ribo-seq	GAG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2311036	42	CTG ...	LFF ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, MDA-MB-231, RPE-1
283001	30	CTG ...	LFP ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231
2311044	33	GTG ...	VPL ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, RPE-1
1723209	42	CTG ...	LDL ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, RPE-1
1723212	120	CTG ...	LDQ ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231, RPE-1
1723205	45	TTG ...	LNV ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, hES, MDA-MB-231, RPE-1
1723214	90	CTG ...	LGR ...	Ribo-seq	CTG	strong	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
904159	120	CTC ...	LFL ...	Ribo-seq	CTC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
526920	177	TTG ...	LLF ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HAP1, HeLa, MDA-MB-231, RPE-1, U2OS

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