Transcript 95264 | MetamORF

Transcript

ID CARD

MetamORF ID

95264

ENST00000610026

Name

PPA1-205

Strand

Biotype

retained_intron

Start-end positions

70203589-70210250

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTA ...

Genome browsers

UCSC

Gene

HGNC:9226

Aliases

ENSG00000180817,
HGNC:9226, IOPPP, NCBI:5464,
OFF:PPA1, PP, PP1,
PPA1, Ppase, SID6-8061

Chr 10

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
895806	156	ACT ...	TLS ...	Ribo-seq	ACT	moderate	2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
97324	132	CTG ...	LKP ...	Ribo-seq	CTG		6	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, HEK293, HeLa
895808	39	AGG ...	RNQ ...	Ribo-seq	AGG		1	sORFs_org_Human	Intronic sORF	Jurkat
895821	87	CTG ...	LWT ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	HeLa, Jurkat
97322	57	CTG ...	LME ...	Ribo-seq	CTG		8	sORFs_org_Human	Intronic sORF	HEK293, HEK293T, HeLa, Monocyte
895804	30	CAA ...	QQT ...	Ribo-seq	CAA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
404482	42	GCA ...	AEF ...	Ribo-seq	GCA		3	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
404480	87	TTT ...	FAI ...	Ribo-seq	TTT		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
97320	54	ATG ...	MEN ...	Ribo-seq	ATG		11	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, HEK293, HEK293T, HeLa, Monocyte
97316	33	TTG ...	LRL ...	Ribo-seq	TTG		12	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, hES, RPE-1
404478	150	TCT ...	SES ...	Ribo-seq	TCT	moderate	1	sORFs_org_Human	Intronic sORF	HCT116
895810	42	TTA ...	LVT ...	Ribo-seq	TTA		1	sORFs_org_Human	Intronic sORF	Jurkat
895812	78	GAT ...	DII ...	Ribo-seq	GAT		2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
1128732	105	GTG ...	VDW ...	Ribo-seq	GTG		1	sORFs_org_Human	Intronic sORF	HEK293
95263	39	GTG ...	VTK ...	Ribo-seq	GTG		32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
97318	39	ATG ...	MSL ...	Ribo-seq	ATG		14	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, hES, Monocyte, RPE-1
895819	36	AGT ...	SLR ...	Ribo-seq	AGT		1	sORFs_org_Human	Intronic sORF	Jurkat
1128727	48	TTG ...	LPL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Intronic sORF	HEK293

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