Transcript 131 | MetamORF

Transcript

ID CARD

MetamORF ID

131

ENST00000602868

Name

SFXN2-213

Strand

Biotype

protein_coding

Start-end positions

102726500-102729392

CDS Start-stop positions

102726637-

CDS Relative positions

Sequences

Transcript sequence

ACG ...

Genome browsers

UCSC

Gene

HGNC:16086

Aliases

ENSG00000156398,
HGNC:16086, NCBI:118980, OFF:SFXN2,
SFXN2, SLC56A2

Chr 10

ORFs

7 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
133	39	ATG ...	MTR ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	sORF	HEK293
2302489	36	TTG ...	LYL ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	sORF	MDA-MB-231
130	54	ATG ...	MPR ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	sORF	HEK293
277961	42	ATG ...	MSS ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	sORF	LCL, MDA-MB-231
2302491	90	TTG ...	LCP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	sORF	HEK293, MDA-MB-231
2305385	93	CTG ...	LGQ ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF	MDA-MB-231
2302487	42	CTG ...	LSL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	sORF	MDA-MB-231

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