Transcript 5826 | MetamORF

Transcript

ID CARD

MetamORF ID

5826

ENST00000567045

Name

MRPL21-208

Strand

Biotype

protein_coding

Start-end positions

68892492-68903778

CDS Start-stop positions

68892600-68896655

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

HGNC:14479

Aliases

ENSG00000197345,
HGNC:14479, MRPL21, NCBI:219927,
OFF:MRPL21

Chr 11

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
8855	33	TTG ...	LRR ...	Ribo-seq	TTG		17	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, U2OS
8847	102	TTG ...	LNF ...	Ribo-seq	TTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, RPE-1, THP-1, U2OS
916793	48	ATA ...	IST ...	Ribo-seq	ATA		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
8861	114	CTG ...	LAS ...	Ribo-seq	CTG		27	sORFs_org_Human	sORF Upstream	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
8857	51	TTG ...	LFC ...	Ribo-seq	TTG		21	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
916785	36	GCA ...	ASH ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
295301	63	TTG ...	LGQ ...	Ribo-seq	TTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
8849	105	CTG ...	LLN ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, RPE-1, THP-1, U2OS
105435	117	CTG ...	LCF ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative sORF Upstream	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES
916791	42	ACC ...	TRV ...	Ribo-seq	ACC		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
8859	87	CTG ...	LRP ...	Ribo-seq	CTG		27	sORFs_org_Human	sORF Upstream	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
916787	54	AAG ...	KLF ...	Ribo-seq	AAG		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
105433	87	TTG ...	LVC ...	Ribo-seq	TTG		19	sORFs_org_Human	Alternative sORF Upstream	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
5825	60	ATG ...	MAK ...	Ribo-seq	ATG	strong	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
916789	69	CAC ...	HHL ...	Ribo-seq	CAC		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
916795	54	CAC ...	HFI ...	Ribo-seq	CAC		2	sORFs_org_Human	Alternative sORF Upstream	HEK293, Jurkat
8853	105	TTG ...	LRV ...	Ribo-seq	TTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
8851	99	GTG ...	VER ...	Ribo-seq	GTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
8845	39	TTG ...	LAS ...	Ribo-seq	TTG		20	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
409763	84	AGA ...	RPS ...	Ribo-seq	AGA		2	sORFs_org_Human	sORF Upstream	HCT116, Jurkat

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