Transcript 11385 | MetamORF

Transcript

ID CARD

MetamORF ID

11385

ENST00000552331

Name

CS-232

Strand

Biotype

retained_intron

Start-end positions

56275761-56282510

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCA ...

Genome browsers

UCSC

Gene

HGNC:2422

Aliases

CS,
ENSG00000062485, HGNC:2422, NCBI:1431,
OFF:CS

Chr 12

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3201788	135	CTC ...	LYR ...	Ribo-seq	CTC	moderate	1	sORFs_org_Human	Intronic sORF	HEK293
411311	141	CGA ...	RNL ...	Ribo-seq	CGA	weak	3	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
300790	39	CTG ...	LVS ...	Ribo-seq	CTG	strong	7	sORFs_org_Human	Intronic sORF	Blood, Flp-In_T-REx-293, HEK293, HeLa, LCL, MM1S
922788	33	CTC ...	LTR ...	Ribo-seq	CTC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
300795	99	TTG ...	LQQ ...	Ribo-seq	TTG	moderate	21	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
11384	93	CTG ...	LDW ...	Ribo-seq	CTG	strong	30	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
300793	54	TTG ...	LGP ...	Ribo-seq	TTG	strong	6	sORFs_org_Human	Intronic sORF	HEK293, HeLa, LCL
11387	63	TTG ...	LCC ...	Ribo-seq	TTG	moderate	28	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
922790	45	CAG ...	QFT ...	Ribo-seq	CAG	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
11389	204	TTG ...	LIY ...	Ribo-seq	TTG	moderate	32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1050988	45	TTG ...	LTL ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	Intronic sORF	HEK293, HeLa
108166	102	GTG ...	VLQ ...	Ribo-seq	GTG	weak	23	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1

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