Transcript 12368 | MetamORF

Transcript

ID CARD

MetamORF ID

12368

ENST00000552091

Name

LTA4H-208

Strand

Biotype

retained_intron

Start-end positions

96013239-96014324

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TAC ...

Genome browsers

UCSC

Gene

HGNC:6710

Aliases

ENSG00000111144,
HGNC:6710, LTA4H, NCBI:4048,
OFF:LTA4H

Chr 12

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
411826	108	ACT ...	TDD ...	Ribo-seq	ACT		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
109431	60	ATG ...	MFS ...	Ribo-seq	ATG		1	sORFs_org_Human	Intronic sORF	Jurkat
411822	84	TAT ...	YSY ...	Ribo-seq	TAT		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
924660	102	GAC ...	DWK ...	Ribo-seq	GAC		1	sORFs_org_Human	Intronic sORF	Jurkat
12370	30	ATG ...	MLR ...	Ribo-seq	ATG	weak	15	sORFs_org_Human	Intronic sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1
924651	57	GTT ...	VDW ...	Ribo-seq	GTT		1	sORFs_org_Human	Intronic sORF	Jurkat
924656	75	TTT ...	FKD ...	Ribo-seq	TTT		1	sORFs_org_Human	Intronic sORF	Jurkat
411824	96	AAG ...	KDF ...	Ribo-seq	AAG		3	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
12367	30	CTG ...	LEG ...	Ribo-seq	CTG	moderate	16	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS

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