Transcript 299790

Transcript

ID CARD

MetamORF ID

299790

ENST00000550252

Name

SPRYD3-205

Strand

Biotype

retained_intron

Start-end positions

53073160-53075744

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TAT ...

Genome browsers

UCSC

Gene

HGNC:25920

Aliases

ENSG00000167778,
FLJ14800, HGNC:25920, NCBI:84926,
OFF:SPRYD3, SPRYD3

Chr 12

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
943720	69	GTG ...	VSF ...	Ribo-seq	GTG		3	sORFs_org_Human	Intronic sORF	Brain, RPE-1
299798	72	GTG ...	VAL ...	Ribo-seq	GTG		3	sORFs_org_Human	Intronic sORF	BJ, LCL, MDA-MB-231
537896	129	GTG ...	VSI ...	Ribo-seq	GTG		10	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HeLa, HFF, MDA-MB-231, RPE-1, U2OS
10952	42	TTG ...	LPD ...	Ribo-seq	TTG		14	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1, THP-1
640844	84	CTG ...	LVP ...	Ribo-seq	CTG		12	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HeLa, HFF, MDA-MB-231, RPE-1, THP-1
640846	90	GTG ...	VGL ...	Ribo-seq	GTG		12	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HeLa, HFF, MDA-MB-231, RPE-1, THP-1
2334364	60	GTG ...	VRR ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Intronic sORF	MDA-MB-231
1828870	66	CTG ...	LWG ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Intronic sORF	HeLa, MDA-MB-231
943724	150	CTG ...	LYN ...	Ribo-seq	CTG		7	sORFs_org_Human	Intronic sORF	BJ, Brain, HeLa, HFF, MDA-MB-231, RPE-1
299802	36	GTG ...	VQL ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	Intronic sORF	BJ, Blood, LCL, MDA-MB-231
943717	48	ATG ...	MCR ...	Ribo-seq	ATG		3	sORFs_org_Human	Intronic sORF	BJ, Brain, MDA-MB-231
299794	60	CTG ...	LCP ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	BJ, LCL
299812	96	TTG ...	LWT ...	Ribo-seq	TTG	weak	3	sORFs_org_Human	Intronic sORF	HeLa, LCL, MDA-MB-231
299808	150	CTG ...	LSV ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	LCL
943730	87	GTG ...	VES ...	Ribo-seq	GTG	strong	4	sORFs_org_Human	Intronic sORF	Brain, HeLa, MDA-MB-231
537894	120	GTG ...	VDS ...	Ribo-seq	GTG		10	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HeLa, HFF, MDA-MB-231, RPE-1, U2OS
299804	108	TTG ...	LGQ ...	Ribo-seq	TTG		4	sORFs_org_Human	Intronic sORF	BJ, Brain, LCL, MDA-MB-231
299806	132	ATG ...	MAE ...	Ribo-seq	ATG		3	sORFs_org_Human	Intronic sORF	Brain, LCL, MDA-MB-231
299792	51	TTG ...	LMC ...	Ribo-seq	TTG		4	sORFs_org_Human	Intronic sORF	BJ, Brain, LCL, MDA-MB-231
10955	63	TTG ...	LDH ...	Ribo-seq	TTG		14	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1, THP-1
299796	66	TTG ...	LSL ...	Ribo-seq	TTG		3	sORFs_org_Human	Intronic sORF	BJ, LCL, MDA-MB-231
1828872	69	TTG ...	LLW ...	Ribo-seq	TTG	weak	3	sORFs_org_Human	Intronic sORF	HeLa, MDA-MB-231
299800	78	TTG ...	LAV ...	Ribo-seq	TTG		2	sORFs_org_Human	Intronic sORF	BJ, LCL
2334366	96	ATG ...	MDC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Intronic sORF	MDA-MB-231
299789	33	CTG ...	LSW ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Intronic sORF	BJ, LCL, MDA-MB-231
943715	57	GTG ...	VQT ...	Ribo-seq	GTG		2	sORFs_org_Human	Intronic sORF	Brain, RPE-1

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