Transcript 13012 | MetamORF

Transcript

ID CARD

MetamORF ID

13012

ENST00000549106

Name

ALDH2-204

Strand

Biotype

nonsense_mediated_decay

Start-end positions

111792611-111809670

CDS Start-stop positions

-111803873

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

HGNC:404

Aliases

ALDH2,
ENSG00000111275, HGNC:404, NCBI:217,
OFF:ALDH2

Chr 12

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1739008	69	TTG ...	LPG ...	Ribo-seq	TTG		2	sORFs_org_Human	NMD sORF	Blood, MDA-MB-231
13011	189	CTG ...	LFF ...	Ribo-seq	CTG		13	sORFs_org_Human	NMD sORF	Brain, guo_2014, HEK293, HeLa, hES, HFF, THP-1, U2OS
643539	51	GTG ...	VVT ...	Ribo-seq	GTG	strong	7	sORFs_org_Human	NMD sORF	BJ, Blood, HEK293, MDA-MB-231, RPE-1, THP-1
643519	48	GTG ...	VLL ...	Ribo-seq	GTG	weak	4	sORFs_org_Human	NMD sORF	Blood, HeLa, MDA-MB-231, THP-1
643533	63	TTG ...	LLL ...	Ribo-seq	TTG	moderate	7	sORFs_org_Human	NMD sORF	BJ, Blood, HEK293, MDA-MB-231, RPE-1, THP-1
643535	60	CTG ...	LLT ...	Ribo-seq	CTG	weak	8	sORFs_org_Human	NMD sORF	BJ, Blood, Brain, HEK293, MDA-MB-231, RPE-1, THP-1
1012158	87	TTG ...	LGE ...	Ribo-seq	TTG		2	sORFs_org_Human	NMD sORF	guo_2014, HEK293
13014	141	GTG ...	VQE ...	Ribo-seq	GTG		12	sORFs_org_Human	NMD sORF	Brain, guo_2014, HEK293, HeLa, HFF, THP-1, U2OS
303999	48	GTG ...	VAG ...	Ribo-seq	GTG	strong	2	sORFs_org_Human	NMD sORF	LCL, MDA-MB-231
1739004	90	ATG ...	MSL ...	Ribo-seq	ATG		2	sORFs_org_Human	NMD sORF	Blood, MDA-MB-231
13035	144	GTG ...	VFG ...	Ribo-seq	GTG		7	sORFs_org_Human	NMD sORF	Brain, guo_2014, HEK293, HeLa, hES, HFF
303997	69	GTG ...	VAT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	NMD sORF	LCL, MDA-MB-231
643541	30	CTG ...	LCL ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	NMD sORF	BJ, Blood, HEK293, MDA-MB-231, RPE-1, THP-1
110323	54	TTG ...	LDK ...	Ribo-seq	TTG		16	sORFs_org_Human	NMD sORF	Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
303995	72	TTG ...	LVA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	NMD sORF	LCL, MDA-MB-231
643529	75	GTG ...	VVG ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	NMD sORF	BJ, Blood, HEK293, MDA-MB-231, THP-1
303991	96	ATG ...	MCL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	NMD sORF	LCL, MDA-MB-231
945253	168	CTG ...	LGS ...	Ribo-seq	CTG		3	sORFs_org_Human	NMD sORF	Brain, MDA-MB-231, RPE-1
13018	81	GTG ...	VVG ...	Ribo-seq	GTG		4	sORFs_org_Human	NMD sORF	Brain, guo_2014, HEK293
945248	129	GTG ...	VPA ...	Ribo-seq	GTG		3	sORFs_org_Human	NMD sORF	Brain, MDA-MB-231, RPE-1
13024	144	CTG ...	LCG ...	Ribo-seq	CTG		8	sORFs_org_Human	NMD sORF	Brain, guo_2014, HEK293, hES, THP-1
303989	144	ATG ...	MKL ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	NMD sORF	HEK293, LCL, MDA-MB-231, RPE-1
13028	138	CTG ...	LKF ...	Ribo-seq	CTG		20	sORFs_org_Human	NMD sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
303993	90	TTG ...	LEP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	NMD sORF	LCL, MDA-MB-231
110318	81	GTG ...	VQD ...	Ribo-seq	GTG		1	sORFs_org_Human	NMD sORF	HEK293
945268	72	CTG ...	LQA ...	Ribo-seq	CTG		1	sORFs_org_Human	NMD sORF	Brain
643523	42	CTG ...	LCR ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	NMD sORF	Blood, HeLa, MDA-MB-231, THP-1
1739006	84	TTG ...	LWS ...	Ribo-seq	TTG		2	sORFs_org_Human	NMD sORF	Blood, MDA-MB-231
643531	72	GTG ...	VGA ...	Ribo-seq	GTG	strong	6	sORFs_org_Human	NMD sORF	BJ, Blood, HEK293, MDA-MB-231, RPE-1, THP-1
13026	150	GTG ...	VMQ ...	Ribo-seq	GTG		20	sORFs_org_Human	NMD sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
540637	36	CTG ...	LSQ ...	Ribo-seq	CTG		13	sORFs_org_Human	NMD sORF	Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, THP-1, U2OS
13022	147	CTG ...	LLC ...	Ribo-seq	CTG		8	sORFs_org_Human	NMD sORF	Brain, guo_2014, HEK293, THP-1
2339664	93	ATG ...	MMS ...	Ribo-seq	ATG		1	sORFs_org_Human	NMD sORF	MDA-MB-231
643521	45	CTG ...	LLC ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	NMD sORF	Blood, HeLa, MDA-MB-231, THP-1
13016	114	GTG ...	VER ...	Ribo-seq	GTG		8	sORFs_org_Human	NMD sORF	Brain, guo_2014, HEK293, HFF, U2OS
1739010	33	TTG ...	LIA ...	Ribo-seq	TTG		2	sORFs_org_Human	NMD sORF	Blood, MDA-MB-231
110316	93	GTG ...	VFG ...	Ribo-seq	GTG		3	sORFs_org_Human	NMD sORF	Brain, HEK293
13020	213	GTG ...	VDE ...	Ribo-seq	GTG		12	sORFs_org_Human	NMD sORF	Brain, guo_2014, HEK293, HeLa, HFF, RPE-1, THP-1, U2OS
2339684	99	ATG ...	MMC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	NMD sORF	MDA-MB-231
643537	57	CTG ...	LTV ...	Ribo-seq	CTG	weak	8	sORFs_org_Human	NMD sORF	BJ, Blood, Brain, HEK293, MDA-MB-231, RPE-1, THP-1
13030	81	CTG ...	LAA ...	Ribo-seq	CTG		18	sORFs_org_Human	NMD sORF	Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS

Export data