Transcript 11073 | MetamORF

Transcript

ID CARD

MetamORF ID

11073

ENST00000548880

Name

AAAS-211

Strand

Biotype

retained_intron

Start-end positions

53315552-53321560

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATA ...

Genome browsers

UCSC

Gene

HGNC:13666

Aliases

AAAS,
ENSG00000094914, HGNC:13666, NCBI:8086,
OFF:AAAS

Chr 12

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
922102	138	CGG ...	RSV ...	Ribo-seq	CGG	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
922097	72	GCG ...	ANR ...	Ribo-seq	GCG	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
1322086	192	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HEK293
1322084	186	TTG ...	LFP ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	HEK293
484620	114	CTG ...	LCR ...	Ribo-seq	CTG	moderate	16	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
3201719	87	GAC ...	DCR ...	Ribo-seq	GAC	moderate	1	sORFs_org_Human	Intronic sORF	HEK293
11072	30	GTG ...	VWK ...	Ribo-seq	GTG		22	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
922099	96	TCC ...	SCE ...	Ribo-seq	TCC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
922090	81	AGT ...	SVE ...	Ribo-seq	AGT		1	sORFs_org_Human	Intronic sORF	Jurkat
11075	75	CTG ...	LDH ...	Ribo-seq	CTG		27	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
411072	87	ACC ...	TPG ...	Ribo-seq	ACC		1	sORFs_org_Human	Intronic sORF	HCT116
11077	108	CTG ...	LTK ...	Ribo-seq	CTG		28	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
484616	105	CTG ...	LQT ...	Ribo-seq	CTG	weak	14	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
922093	96	CCA ...	PSP ...	Ribo-seq	CCA		1	sORFs_org_Human	Intronic sORF	Jurkat
300112	39	TTG ...	LCY ...	Ribo-seq	TTG		2	sORFs_org_Human	Intronic sORF	HEK293, LCL
640919	57	GTG ...	VLS ...	Ribo-seq	GTG	moderate	8	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, MDA-MB-231, RPE-1, THP-1
411070	207	GAA ...	EGW ...	Ribo-seq	GAA		1	sORFs_org_Human	Intronic sORF	HCT116
484624	129	TTG ...	LRE ...	Ribo-seq	TTG	moderate	15	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
1322082	183	GTG ...	VDQ ...	Ribo-seq	GTG		4	sORFs_org_Human	Intronic sORF	HEK293, HeLa, RPE-1
484618	132	GTG ...	VPF ...	Ribo-seq	GTG	weak	10	sORFs_org_Human	Intronic sORF	HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, MDA-MB-231, RPE-1, THP-1, U2OS
411068	36	GAG ...	EQV ...	Ribo-seq	GAG		3	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
484622	141	GTG ...	VRS ...	Ribo-seq	GTG	moderate	9	sORFs_org_Human	Intronic sORF	BJ, HAP1, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1, THP-1, U2OS
922095	174	TCT ...	SSC ...	Ribo-seq	TCT		1	sORFs_org_Human	Intronic sORF	Jurkat

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