Transcript 12295 | MetamORF

Transcript

ID CARD

MetamORF ID

12295

ENST00000548545

Name

MRPL42-204

Strand

Biotype

protein_coding

Start-end positions

93469214-93487897

CDS Start-stop positions

93469286-93487664

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

HGNC:14493

Aliases

ENSG00000198015,
HGNC:14493, HSPC204, MRP-L31,
MRPL31, MRPL42, MRPS32,
NCBI:28977, OFF:MRPL42, PTD007,
RPML31

Chr 12

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
411779	48	GAT ...	DVK ...	Ribo-seq	GAT		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
112460	30	TTG ...	LQR ...	Ribo-seq	TTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
924482	45	ATT ...	IYF ...	Ribo-seq	ATT		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
642843	33	ATG ...	MLP ...	Ribo-seq	ATG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
109343	84	TTG ...	LKH ...	Ribo-seq	TTG		20	sORFs_org_Human	Alternative Overlapping sORF Upstream	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
924484	54	GTC ...	VIN ...	Ribo-seq	GTC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
12297	60	GTG ...	VFV ...	Ribo-seq	GTG		20	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
14950	72	ATG ...	MEL ...	Ribo-seq	ATG		19	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
708189	66	AAA ...	KEN ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
924486	42	CGT ...	RIL ...	Ribo-seq	CGT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
924480	42	AAA ...	KEN ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
413241	72	GAT ...	DVK ...	Ribo-seq	GAT		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
708193	39	CGT ...	RIL ...	Ribo-seq	CGT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
109345	54	ATG ...	MGD ...	Ribo-seq	ATG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HCT116, HEK293, HeLa, hES, Jurkat, LCL, MDA-MB-231, RPE-1
924474	48	TCT ...	SFF ...	Ribo-seq	TCT	moderate	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
112453	78	ATG ...	MGD ...	Ribo-seq	ATG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HCT116, HEK293, HeLa, hES, Jurkat, LCL, MDA-MB-231, RPE-1, THP-1
12294	75	ATG ...	MEL ...	Ribo-seq	ATG		20	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
14952	57	GTG ...	VFV ...	Ribo-seq	GTG		19	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
109351	39	CTG ...	LCI ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1
109341	96	TTG ...	LIS ...	Ribo-seq	TTG		17	sORFs_org_Human	Alternative Overlapping sORF Upstream	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
309142	87	CTG ...	LWT ...	Ribo-seq	CTG		13	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
109349	39	CTG ...	LWT ...	Ribo-seq	CTG		11	sORFs_org_Human	InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES
924488	39	AAT ...	NSM ...	Ribo-seq	AAT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
924490	48	ACC ...	TTL ...	Ribo-seq	ACC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
708195	96	ACC ...	TTL ...	Ribo-seq	ACC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
708191	51	GTC ...	VIN ...	Ribo-seq	GTC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
411781	48	AAC ...	NIY ...	Ribo-seq	AAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116

Export data