Transcript 13005 | MetamORF

Transcript

ID CARD

MetamORF ID

13005

ENST00000548536

Name

ALDH2-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

111766948-111809630

CDS Start-stop positions

111766983-111781927

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

HGNC:404

Aliases

ALDH2,
ENSG00000111275, HGNC:404, NCBI:217,
OFF:ALDH2

Chr 12

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
110306	33	GTG ...	VAF ...	Ribo-seq	GTG		14	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, guo_2014, HEK293, HeLa, hES, HFF, RPE-1, THP-1, U2OS
643511	84	CTG ...	LDL ...	Ribo-seq	CTG		5	sORFs_org_Human	Downstream NMD sORF	Blood, HEK293, MDA-MB-231, THP-1
2339653	33	TTG ...	LLL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
13009	210	GTG ...	VEQ ...	Ribo-seq	GTG		12	sORFs_org_Human	Downstream NMD sORF	Brain, guo_2014, HEK293, HeLa, hES, MDA-MB-231, THP-1, U2OS
540637	36	CTG ...	LSQ ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293
643497	153	GTG ...	VTP ...	Ribo-seq	GTG		2	sORFs_org_Human	Downstream NMD sORF	HEK293, THP-1
2339655	30	CTG ...	LLG ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream NMD sORF	MDA-MB-231
643505	102	GTG ...	VWS ...	Ribo-seq	GTG		5	sORFs_org_Human	Downstream NMD sORF	Blood, HEK293, MDA-MB-231, THP-1
1096916	45	ATG ...	MRM ...	Ribo-seq	ATG		7	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, HEK293, HeLa, hES, MDA-MB-231
643513	78	TTG ...	LAP ...	Ribo-seq	TTG		5	sORFs_org_Human	Downstream NMD sORF	Blood, HEK293, MDA-MB-231, THP-1
643503	105	CTG ...	LVW ...	Ribo-seq	CTG		4	sORFs_org_Human	Downstream NMD sORF	Blood, HEK293, MDA-MB-231, THP-1
1096912	66	CTG ...	LGP ...	Ribo-seq	CTG		4	sORFs_org_Human	Downstream NMD sORF	Blood, HEK293, MDA-MB-231
13007	93	GTG ...	VPG ...	Ribo-seq	GTG		19	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
1096914	54	TTG ...	LPP ...	Ribo-seq	TTG		5	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, HEK293, MDA-MB-231
13004	105	GTG ...	VVN ...	Ribo-seq	GTG		20	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
643499	132	CTG ...	LFA ...	Ribo-seq	CTG		4	sORFs_org_Human	Downstream NMD sORF	Blood, HEK293, MDA-MB-231, THP-1
110302	39	ATG ...	MWT ...	Ribo-seq	ATG		7	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231
643501	117	CTG ...	LAF ...	Ribo-seq	CTG		5	sORFs_org_Human	Downstream NMD sORF	Blood, HEK293, MDA-MB-231, RPE-1, THP-1
945244	213	CTG ...	LSP ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative Downstream NMD sORF	Brain, MDA-MB-231
1738997	117	CTG ...	LPT ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	Blood
110304	42	GTG ...	VDK ...	Ribo-seq	GTG		19	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
1738999	96	TTG ...	LGR ...	Ribo-seq	TTG	strong	2	sORFs_org_Human	Alternative Downstream NMD sORF	Blood, MDA-MB-231
643508	90	TTG ...	LCL ...	Ribo-seq	TTG		5	sORFs_org_Human	Downstream NMD sORF	Blood, HEK293, MDA-MB-231, THP-1

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