Transcript 12824 | MetamORF

Transcript

ID CARD

MetamORF ID

12824

ENST00000548234

Name

ANAPC7-210

Strand

Biotype

retained_intron

Start-end positions

110377591-110387277

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

HGNC:17380

Aliases

ANAPC7,
APC7, ENSG00000196510, HGNC:17380,
NCBI:51434, OFF:ANAPC7

Chr 12

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
925980	72	GAT ...	DQH ...	Ribo-seq	GAT		1	sORFs_org_Human	Intronic sORF	Jurkat
925978	63	GCA ...	AEP ...	Ribo-seq	GCA		1	sORFs_org_Human	Intronic sORF	Jurkat
1738782	72	ATG ...	MSF ...	Ribo-seq	ATG		5	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, RPE-1
110114	30	TTG ...	LDP ...	Ribo-seq	TTG		13	sORFs_org_Human	Intronic sORF	Blood, Brain, HEK293, HeLa, hES, RPE-1, THP-1
12826	33	ATG ...	MAT ...	Ribo-seq	ATG	moderate	12	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
110112	66	GTG ...	VFK ...	Ribo-seq	GTG	moderate	10	sORFs_org_Human	Intronic sORF	Blood, HEK293, hES, LCL, MDA-MB-231, RPE-1, THP-1
303846	39	ATG ...	MYM ...	Ribo-seq	ATG	weak	8	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
12832	108	TTG ...	LGS ...	Ribo-seq	TTG		24	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
12830	99	TTG ...	LAD ...	Ribo-seq	TTG		23	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
925984	153	GAT ...	DVY ...	Ribo-seq	GAT		1	sORFs_org_Human	Intronic sORF	Jurkat
12823	135	CTG ...	LAR ...	Ribo-seq	CTG		9	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES, LCL, RPE-1
12834	117	GTG ...	VDL ...	Ribo-seq	GTG		24	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
12836	129	TTG ...	LRD ...	Ribo-seq	TTG		24	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
925974	39	GGC ...	GHT ...	Ribo-seq	GGC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
925972	258	GCC ...	ASN ...	Ribo-seq	GCC		1	sORFs_org_Human	Intronic sORF	Jurkat
925976	273	GGC ...	GRV ...	Ribo-seq	GGC		1	sORFs_org_Human	Intronic sORF	Jurkat
12828	90	CTG ...	LYF ...	Ribo-seq	CTG		20	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1

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