Transcript 12794 | MetamORF

Transcript

ID CARD

MetamORF ID

12794

ENST00000547792

Name

ATP2A2-206

Strand

Biotype

retained_intron

Start-end positions

110343256-110345247

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

HGNC:812

Aliases

ATP2A2,
ATP2B, DAR, ENSG00000174437,
HGNC:812, NCBI:488, OFF:ATP2A2,
SERCA2

Chr 12

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
110090	162	CTG ...	LDI ...	Ribo-seq	CTG		6	sORFs_org_Human	Intronic sORF	Brain, HEK293, HeLa
12796	228	CTG ...	LLW ...	Ribo-seq	CTG		17	sORFs_org_Human	Intronic sORF	Brain, guo_2014, HEK293, HeLa, hES, HFF, LCL, RPE-1, Skeletal_muscle, THP-1, U2OS
412103	174	GCA ...	AWW ...	Ribo-seq	GCA	moderate	1	sORFs_org_Human	Intronic sORF	HCT116
303829	69	GTG ...	VFV ...	Ribo-seq	GTG		17	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, HFF, LCL, MM1S, RPE-1, U2OS
12814	36	GTG ...	VAL ...	Ribo-seq	GTG		23	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HCT116, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, Skeletal_muscle, U2OS
12798	60	CTG ...	LGQ ...	Ribo-seq	CTG	strong	24	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
12806	198	CTG ...	LPA ...	Ribo-seq	CTG		13	sORFs_org_Human	Intronic sORF	Brain, guo_2014, HEK293, HeLa, hES, HFF, Skeletal_muscle
925936	45	GAT ...	DQR ...	Ribo-seq	GAT		1	sORFs_org_Human	Intronic sORF	Jurkat
3231959	129	CTG ...	LLP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Intronic sORF	HeLa
12808	45	CTG ...	LPL ...	Ribo-seq	CTG	weak	20	sORFs_org_Human	Intronic sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
3187556	66	CCG ...	PEP ...	Ribo-seq	CCG		1	sORFs_org_Human	Intronic sORF	HEK293
925932	165	GAT ...	DLD ...	Ribo-seq	GAT		1	sORFs_org_Human	Intronic sORF	Jurkat
12800	213	CTG ...	LVT ...	Ribo-seq	CTG		14	sORFs_org_Human	Intronic sORF	Brain, guo_2014, HEK293, HeLa, hES, HFF, Skeletal_muscle, U2OS
303821	30	CTG ...	LFS ...	Ribo-seq	CTG	weak	16	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
12802	210	GTG ...	VTD ...	Ribo-seq	GTG		16	sORFs_org_Human	Intronic sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, Skeletal_muscle, U2OS
12812	183	CTG ...	LGF ...	Ribo-seq	CTG		13	sORFs_org_Human	Intronic sORF	Brain, guo_2014, HEK293, HeLa, hES, HFF, Skeletal_muscle
945162	120	TTG ...	LIS ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	Brain
12793	243	TTG ...	LIP ...	Ribo-seq	TTG		20	sORFs_org_Human	Intronic sORF	BJ, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, RPE-1, Skeletal_muscle, THP-1, U2OS
12810	39	CTG ...	LHW ...	Ribo-seq	CTG	weak	19	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
925930	33	GCC ...	ACH ...	Ribo-seq	GCC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
925938	51	CGT ...	RRR ...	Ribo-seq	CGT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
12804	54	ATG ...	MAC ...	Ribo-seq	ATG	moderate	21	sORFs_org_Human	Intronic sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS

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