Transcript 12197 | MetamORF

Transcript

ID CARD

MetamORF ID

12197

ENST00000547435

Name

CSRP2-203

Strand

Biotype

protein_coding

Start-end positions

76859469-76878985

CDS Start-stop positions

76859488-76866260

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

HGNC:2470

Aliases

CRP2,
CSRP2, ENSG00000175183, HGNC:2470,
LMO5, NCBI:1466, OFF:CSRP2,
SmLIM

Chr 12

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
14931	240	ATG ...	MKR ...	Ribo-seq	ATG		9	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, hES, HFF, MDA-MB-231
12196	114	ATG ...	MAR ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES
12199	135	ATG ...	MGQ ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES
12205	174	ATG ...	MKR ...	Ribo-seq	ATG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, RPE-1
2964782	117	GTG ...	VFS ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	hES
14929	201	ATG ...	MGQ ...	Ribo-seq	ATG		5	sORFs_org_Human	InCDS Overlapping sORF	HEK293, hES, MDA-MB-231
452002	129	CTG ...	LSG ...	Ribo-seq	CTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HEK293, HEK293T, HeLa, HFF, MDA-MB-231, RPE-1
14925	168	CTG ...	LAR ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, hES
1213277	57	ATG ...	MAG ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293
924227	183	CAA ...	QFT ...	Ribo-seq	CAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
924222	129	CAA ...	QKA ...	Ribo-seq	CAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1325599	99	GTG ...	VLP ...	Ribo-seq	GTG		6	sORFs_org_Human	Overlapping sORF Upstream	HEK293, HeLa, MDA-MB-231, RPE-1
12203	72	CTG ...	LQI ...	Ribo-seq	CTG	weak	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, U2OS
1213279	60	GTG ...	VMA ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1
924224	144	GAA ...	ERS ...	Ribo-seq	GAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1096450	102	CTG ...	LAR ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
1213283	105	GTG ...	VGP ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1
12201	63	CTG ...	LLR ...	Ribo-seq	CTG	moderate	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, U2OS
1213281	96	GTG ...	VGG ...	Ribo-seq	GTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HEK293, HEK293T, HeLa, HFF, MDA-MB-231, RPE-1
14927	180	ATG ...	MAR ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, hES
1213285	117	GTG ...	VET ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1

Export data