Transcript 11058 | MetamORF

Transcript

ID CARD

MetamORF ID

11058

ENST00000547238

Name

AAAS-206

Strand

Biotype

retained_intron

Start-end positions

53309650-53321208

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTA ...

Genome browsers

UCSC

Gene

HGNC:13666

Aliases

AAAS,
ENSG00000094914, HGNC:13666, NCBI:8086,
OFF:AAAS

Chr 12

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
300098	87	GTG ...	VPL ...	Ribo-seq	GTG		5	sORFs_org_Human	Intronic sORF	HEK293, HeLa, LCL, U2OS
11062	69	TTG ...	LAV ...	Ribo-seq	TTG		17	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
11060	63	GTG ...	VAC ...	Ribo-seq	GTG		17	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
922082	84	ATA ...	IHL ...	Ribo-seq	ATA		1	sORFs_org_Human	Intronic sORF	Jurkat
922086	72	GTC ...	VLA ...	Ribo-seq	GTC		1	sORFs_org_Human	Intronic sORF	Jurkat
300102	117	ATG ...	MWR ...	Ribo-seq	ATG		8	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, LCL, U2OS
11057	30	CTG ...	LDP ...	Ribo-seq	CTG		10	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, hES, RPE-1, THP-1, U2OS
300096	81	CTG ...	LSW ...	Ribo-seq	CTG		3	sORFs_org_Human	Intronic sORF	HEK293, HeLa, LCL
300093	72	CTG ...	LWP ...	Ribo-seq	CTG		4	sORFs_org_Human	Intronic sORF	HEK293, HeLa, hES, LCL
922088	93	CCC ...	PLV ...	Ribo-seq	CCC		1	sORFs_org_Human	Intronic sORF	Jurkat
922084	93	ACC ...	TLG ...	Ribo-seq	ACC		1	sORFs_org_Human	Intronic sORF	Jurkat
11064	99	CTG ...	LAW ...	Ribo-seq	CTG		18	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
11070	132	CTG ...	LKH ...	Ribo-seq	CTG		21	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
11068	120	CTG ...	LQR ...	Ribo-seq	CTG		21	sORFs_org_Human	Intronic sORF	BJ, Blood, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
11066	108	GTG ...	VAS ...	Ribo-seq	GTG		19	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS

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