Transcript 298927

Transcript

ID CARD

MetamORF ID

298927

ENST00000546519

Name

SLC38A1-203

Strand

Biotype

processed_transcript

Start-end positions

46268860-46270017

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

HGNC:13447

Aliases

ATA1,
ENSG00000111371, HGNC:13447, NAT2,
NCBI:81539, OFF:SLC38A1, SAT1,
SLC38A1

Chr 12

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
921018	168	TGG ...	WLK ...	Ribo-seq	TGG	weak	2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
1515012	48	GTG ...	VTP ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	ncRNA sORF	BJ, HeLa, MM1S, RPE-1
3201632	63	GCG ...	ASP ...	Ribo-seq	GCG	weak	1	sORFs_org_Human	ncRNA sORF	HEK293
921014	45	CCA ...	PSQ ...	Ribo-seq	CCA	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
298931	108	CTG ...	LSA ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
921016	54	CGC ...	RVK ...	Ribo-seq	CGC	strong	1	sORFs_org_Human	ncRNA sORF	Jurkat
2551108	63	GTG ...	VRP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	ncRNA sORF	HEK293, MM1S, RPE-1
298929	78	TTG ...	LRK ...	Ribo-seq	TTG	weak	16	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1
107192	45	ATG ...	MTP ...	Ribo-seq	ATG	moderate	18	sORFs_org_Human	ncRNA sORF	Blood, HCT116, HEK293, HeLa, hES, Jurkat, LCL, MDA-MB-231, RPE-1, THP-1
1140921	120	TTG ...	LVK ...	Ribo-seq	TTG	strong	3	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, RPE-1
484455	33	ATG ...	MVA ...	Ribo-seq	ATG	strong	18	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, Jurkat, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1

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