Transcript 10822 | MetamORF

Transcript

ID CARD

MetamORF ID

10822

ENST00000546244

Name

MCRS1-203

Strand

Biotype

protein_coding

Start-end positions

49558295-49568145

CDS Start-stop positions

49558643-49563530

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

HGNC:6960

Aliases

ENSG00000187778,
HGNC:6960, ICP22BP, INO80Q,
MCRS1, MCRS2, MSP58,
NCBI:10445, OFF:MCRS1, P78

Chr 12

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
10832	90	CTG ...	LGV ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative sORF Upstream	Blood, HEK293, HeLa, hES, MDA-MB-231, THP-1, U2OS
2333840	63	GTG ...	VGW ...	Ribo-seq	GTG		2	sORFs_org_Human	sORF Upstream	HEK293, MDA-MB-231
10840	111	GTG ...	VKK ...	Ribo-seq	GTG		18	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
921510	36	TAC ...	YAL ...	Ribo-seq	TAC		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
107425	33	GTG ...	VNP ...	Ribo-seq	GTG		6	sORFs_org_Human	sORF Upstream	HEK293, HeLa, MDA-MB-231, THP-1
1325073	183	ATG ...	MSW ...	Ribo-seq	ATG		3	sORFs_org_Human	sORF Upstream	HEK293, hES, MDA-MB-231
484554	54	TTG ...	LQP ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293T, MDA-MB-231, THP-1
10836	72	CTG ...	LGR ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative sORF Upstream	BJ, HEK293, HeLa, hES, RPE-1, THP-1
640627	66	CTG ...	LSG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative Overlapping sORF Upstream	Blood, HEK293, MDA-MB-231, THP-1
1735311	108	GTG ...	VIS ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
10838	84	GTG ...	VTK ...	Ribo-seq	GTG		12	sORFs_org_Human	Alternative sORF Upstream	BJ, Brain, HEK293, HeLa, hES, Jurkat, RPE-1, THP-1
1325079	291	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF Upstream	HEK293
1735309	96	TTG ...	LPM ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
1050650	48	CTG ...	LCH ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	sORF Upstream	HEK293, MDA-MB-231, RPE-1
640639	114	CTG ...	LAK ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative sORF Upstream	HEK293, hES, HFF, MDA-MB-231, THP-1
10842	153	GTG ...	VPP ...	Ribo-seq	GTG		15	sORFs_org_Human	Alternative sORF Upstream	HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
921512	66	TTC ...	FTL ...	Ribo-seq	TTC		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
640641	126	GTG ...	VES ...	Ribo-seq	GTG		6	sORFs_org_Human	Alternative sORF Upstream	HEK293, hES, HFF, MDA-MB-231, THP-1
299352	33	GTG ...	VAG ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
2812842	42	CTG ...	LLI ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative sORF Upstream	hES, RPE-1
299349	90	ATG ...	MRV ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231
1321838	120	ATG ...	MMS ...	Ribo-seq	ATG		4	sORFs_org_Human	sORF Upstream	HEK293, hES, MDA-MB-231
1325075	186	ATG ...	MMS ...	Ribo-seq	ATG		3	sORFs_org_Human	sORF Upstream	HEK293, hES, MDA-MB-231
640637	75	GTG ...	VEP ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative sORF Upstream	hES, THP-1
410870	123	CGG ...	RKP ...	Ribo-seq	CGG		2	sORFs_org_Human	Alternative sORF Upstream	HCT116, Jurkat
1325077	264	GTG ...	VNG ...	Ribo-seq	GTG		1	sORFs_org_Human	sORF Upstream	HEK293
10830	84	GTG ...	VKF ...	Ribo-seq	GTG		12	sORFs_org_Human	Alternative sORF Upstream	Blood, HEK293, HeLa, hES, MDA-MB-231, THP-1, U2OS
1321836	117	ATG ...	MSW ...	Ribo-seq	ATG		5	sORFs_org_Human	sORF Upstream	HEK293, hES, MDA-MB-231
10834	105	CTG ...	LTS ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative sORF Upstream	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
10828	30	CTG ...	LLY ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative sORF Upstream	HEK293, HeLa, hES, LCL
10824	60	CTG ...	LMP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
1443297	111	TTG ...	LAL ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative sORF Upstream	HeLa
410868	138	GAT ...	DDE ...	Ribo-seq	GAT		1	sORFs_org_Human	Alternative sORF Upstream	HCT116
921521	51	CCT ...	PAA ...	Ribo-seq	CCT	strong	2	sORFs_org_Human	Alternative sORF Upstream	HEK293, Jurkat
107418	48	CTG ...	LAA ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, MDA-MB-231
1144328	129	GTG ...	VGW ...	Ribo-seq	GTG		4	sORFs_org_Human	sORF Upstream	HEK293, hES, MDA-MB-231
537556	66	CTG ...	LTG ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231, U2OS
921514	54	GCA ...	ADD ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
640643	129	CTG ...	LVE ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative sORF Upstream	HEK293, hES, HFF, MDA-MB-231, THP-1
10821	57	ATG ...	MPS ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
111960	99	GTG ...	VNP ...	Ribo-seq	GTG		6	sORFs_org_Human	sORF Upstream	HEK293, hES, MDA-MB-231

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