Transcript 290853

Transcript

ID CARD

MetamORF ID

290853

ENST00000545354

Name

UBE4A-203

Strand

Biotype

protein_coding

Start-end positions

118378501-118396507

CDS Start-stop positions

118379459-118396440

CDS Relative positions

Sequences

Transcript sequence

GTA ...

Genome browsers

UCSC

Gene

HGNC:12499

Aliases

E4,
ENSG00000110344, HGNC:12499, KIAA0126,
NCBI:9354, OFF:UBE4A, UBE4A,
UBOX2, UFD2

Chr 11

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1729229	63	CTG ...	LCP ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
2322511	81	TTG ...	LPM ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
913603	33	CCA ...	PSS ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
290863	39	GTG ...	VAC ...	Ribo-seq	GTG	strong	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	guo_2014, HEK293, LCL, RPE-1, U2OS
292402	87	TTG ...	LQD ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231
913600	93	CCA ...	PPE ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1729224	36	ATG ...	MPS ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
913598	102	CAG ...	QCV ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
531989	84	CTG ...	LCH ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, RPE-1, U2OS
913607	30	CGG ...	RYP ...	Ribo-seq	CGG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
292398	132	CTG ...	LWC ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
533156	90	CTG ...	LQL ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, U2OS
292396	138	GTG ...	VTL ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
531984	75	CTG ...	LQL ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, U2OS
290857	33	TTG ...	LRR ...	Ribo-seq	TTG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
1729218	66	GTG ...	VCS ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
290861	69	GTG ...	VTK ...	Ribo-seq	GTG		5	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231
913609	81	CTC ...	LHV ...	Ribo-seq	CTC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2322513	75	ATG ...	MTF ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
913612	48	TGC ...	CRP ...	Ribo-seq	TGC	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2322528	84	TTG ...	LDS ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
531986	33	GTG ...	VGD ...	Ribo-seq	GTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, MDA-MB-231, RPE-1, U2OS
1729213	72	TTG ...	LPG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa
2322520	45	TTG ...	LNR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2322515	39	ATG ...	MSF ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
1730368	42	ATG ...	MMP ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
913596	108	GGT ...	GIQ ...	Ribo-seq	GGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1729215	60	ATG ...	MLS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa
913616	90	CAC ...	HHG ...	Ribo-seq	CAC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1729231	51	ATG ...	MDV ...	Ribo-seq	ATG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
290859	42	TTG ...	LCI ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL
1729234	39	ATG ...	MQM ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
290855	36	TTG ...	LWT ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	LCL
939707	39	ATG ...	MMP ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HEK293, HeLa, MDA-MB-231
2322526	99	CTG ...	LAY ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
915296	36	CCA ...	PSS ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
290852	60	CTG ...	LPK ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, LCL, MDA-MB-231
292400	105	CTG ...	LWI ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
1509897	72	TTG ...	LQT ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, MDA-MB-231
1729236	33	ATG ...	MPV ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1729227	69	GTG ...	VPL ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
1730370	39	ATG ...	MPS ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
1729220	48	GTG ...	VCS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231

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