Transcript 2848 | MetamORF

Transcript

ID CARD

MetamORF ID

2848

ENST00000545247

Name

TSG101-210

Strand

Biotype

retained_intron

Start-end positions

18483836-18526913

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

HGNC:15971

Aliases

ENSG00000074319,
HGNC:15971, NCBI:7251, OFF:TSG101,
TSG10, TSG101, VPS23

Chr 11

ORFs

7 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
406964	39	TTA ...	LDQ ...	Ribo-seq	TTA	moderate	1	sORFs_org_Human	Intronic sORF	HCT116
2857	153	CTG ...	LDT ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HeLa
283700	135	ATG ...	MAD ...	Ribo-seq	ATG	strong	6	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, LCL, U2OS
527175	102	TTG ...	LKR ...	Ribo-seq	TTG	moderate	9	sORFs_org_Human	Intronic sORF	BJ, Brain, HEK293, HeLa, hES, HFF, U2OS
936609	60	CTG ...	LEE ...	Ribo-seq	CTG	strong	1	sORFs_org_Human	Intronic sORF	Brain
936611	81	CTG ...	LKK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Intronic sORF	Brain, HFF
2847	156	CTG ...	LRW ...	Ribo-seq	CTG	moderate	16	sORFs_org_Human	Intronic sORF	BJ, Brain, HEK293, HeLa, hES, HFF, U2OS

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