Transcript 13434 | MetamORF

Transcript

ID CARD

MetamORF ID

13434

ENST00000545218

Name

ANAPC5-221

Strand

Biotype

processed_transcript

Start-end positions

121317890-121337331

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TAA ...

Genome browsers

UCSC

Gene

HGNC:15713

Aliases

ANAPC5,
APC5, ENSG00000089053, HGNC:15713,
NCBI:51433, OFF:ANAPC5

Chr 12

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
13446	48	TTG ...	LVH ...	Ribo-seq	TTG		19	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
706731	228	CAT ...	HLA ...	Ribo-seq	CAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
110779	105	CTG ...	LQA ...	Ribo-seq	CTG		15	sORFs_org_Human	ncRNA sORF	BJ, Brain, HAP1, HEK293, HeLa, hES, HFF, RPE-1, THP-1
708484	141	CAG ...	QAL ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
14041	84	CTG ...	LKN ...	Ribo-seq	CTG		10	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, MDA-MB-231, THP-1
13440	159	GTG ...	VAE ...	Ribo-seq	GTG		20	sORFs_org_Human	ncRNA sORF	BJ, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
13436	93	CTG ...	LAI ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	Blood, HEK293, MDA-MB-231, THP-1, U2OS
13442	165	CTG ...	LSV ...	Ribo-seq	CTG		20	sORFs_org_Human	ncRNA sORF	BJ, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
110775	63	TTG ...	LAS ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	HEK293
13438	150	CTG ...	LYW ...	Ribo-seq	CTG		19	sORFs_org_Human	ncRNA sORF	BJ, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
13433	117	CTG ...	LPM ...	Ribo-seq	CTG		16	sORFs_org_Human	ncRNA sORF	BJ, Brain, HAP1, HEK293, HeLa, hES, HFF, RPE-1, U2OS
110777	96	CTG ...	LAL ...	Ribo-seq	CTG		11	sORFs_org_Human	ncRNA sORF	BJ, Brain, HAP1, HEK293, HeLa, hES, HFF
1832287	132	GTG ...	VSY ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, MDA-MB-231
14047	225	TTG ...	LAD ...	Ribo-seq	TTG		22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
13448	51	TTG ...	LLV ...	Ribo-seq	TTG		19	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
13444	30	CTG ...	LKN ...	Ribo-seq	CTG		17	sORFs_org_Human	ncRNA sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, RPE-1, THP-1, U2OS
1739536	78	TTG ...	LYY ...	Ribo-seq	TTG	weak	3	sORFs_org_Human	ncRNA sORF	Blood, HEK293, MDA-MB-231
14043	102	TTG ...	LVH ...	Ribo-seq	TTG		13	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
14045	105	TTG ...	LLV ...	Ribo-seq	TTG		13	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
13450	63	TTG ...	LAD ...	Ribo-seq	TTG		4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, HFF
945949	135	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	Brain

Export data