Transcript 9740 | MetamORF

Transcript

ID CARD

MetamORF ID

9740

ENST00000542492

Name

NCAPD2-212

Strand

Biotype

processed_transcript

Start-end positions

6523200-6528067

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

HGNC:24305

Aliases

CAP-D2,
CNAP1, ENSG00000010292, hCAP-D2,
HGNC:24305, KIAA0159, NCAPD2,
NCBI:9918, OFF:NCAPD2

Chr 12

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
9754	120	CTG ...	LGL ...	Ribo-seq	CTG		5	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HFF
9752	87	CTG ...	LWE ...	Ribo-seq	CTG		24	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
1826547	102	ATG ...	MRS ...	Ribo-seq	ATG		2	sORFs_org_Human	ncRNA sORF	HeLa
296749	105	ATG ...	MIP ...	Ribo-seq	ATG		2	sORFs_org_Human	ncRNA sORF	LCL, U2OS
410187	120	AAG ...	KDE ...	Ribo-seq	AAG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
9739	42	ATG ...	MPR ...	Ribo-seq	ATG		15	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
918793	96	TTG ...	LLK ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	Jurkat
9750	90	CTG ...	LLW ...	Ribo-seq	CTG		23	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
1050160	57	ATG ...	MPL ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	HEK293
3201410	93	CAG ...	QLL ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	HEK293
1010581	57	TTG ...	LSP ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	guo_2014
9742	33	TTG ...	LGP ...	Ribo-seq	TTG		15	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
535881	72	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	U2OS
918789	51	AGA ...	RGR ...	Ribo-seq	AGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
9748	99	GTG ...	VTQ ...	Ribo-seq	GTG		22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
106154	48	CTG ...	LER ...	Ribo-seq	CTG		23	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
296751	69	CTG ...	LRP ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
9744	126	GTG ...	VQK ...	Ribo-seq	GTG		26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
535884	36	TTG ...	LGQ ...	Ribo-seq	TTG	moderate	8	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, MDA-MB-231, RPE-1, U2OS
1050162	51	TTG ...	LPT ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HEK293
9756	114	CTG ...	LVG ...	Ribo-seq	CTG		5	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HFF
9746	111	TTG ...	LKP ...	Ribo-seq	TTG		23	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
1733847	90	CTG ...	LFP ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	ncRNA sORF	Blood

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