Transcript 9718 | MetamORF

Transcript

ID CARD

MetamORF ID

9718

ENST00000542472

Name

NCAPD2-211

Strand

Biotype

processed_transcript

Start-end positions

6517793-6521933

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

HGNC:24305

Aliases

CAP-D2,
CNAP1, ENSG00000010292, hCAP-D2,
HGNC:24305, KIAA0159, NCAPD2,
NCBI:9918, OFF:NCAPD2

Chr 12

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
410172	72	GCC ...	ANT ...	Ribo-seq	GCC		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
296738	144	CTG ...	LVF ...	Ribo-seq	CTG		13	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
410176	78	TCA ...	SEE ...	Ribo-seq	TCA		1	sORFs_org_Human	ncRNA sORF	HCT116
918775	51	GAT ...	DVK ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
639437	81	GTG ...	VGS ...	Ribo-seq	GTG	strong	4	sORFs_org_Human	ncRNA sORF	BJ, Blood, MDA-MB-231, THP-1
106133	60	TTG ...	LNI ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	HEK293
1733839	39	CTG ...	LSK ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	ncRNA sORF	Blood, HeLa, MDA-MB-231
410170	168	GAG ...	EEE ...	Ribo-seq	GAG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
296741	63	CTG ...	LSV ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	ncRNA sORF	HeLa, LCL, MDA-MB-231
918772	141	GAG ...	ELK ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
3201405	99	AGG ...	RPL ...	Ribo-seq	AGG		1	sORFs_org_Human	ncRNA sORF	HEK293
106131	141	GTG ...	VFF ...	Ribo-seq	GTG		14	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
9722	126	CTG ...	LQQ ...	Ribo-seq	CTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
918779	114	CAC ...	HSR ...	Ribo-seq	CAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
1095166	30	TTG ...	LPI ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, hES, MDA-MB-231
410182	183	GGA ...	GND ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	HCT116
9720	138	TTG ...	LKS ...	Ribo-seq	TTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
9724	48	GTG ...	VKG ...	Ribo-seq	GTG		21	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
918781	105	AGC ...	SHR ...	Ribo-seq	AGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
410178	291	GCA ...	AAS ...	Ribo-seq	GCA		1	sORFs_org_Human	ncRNA sORF	HCT116
296736	159	CTG ...	LGT ...	Ribo-seq	CTG		9	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES, LCL, RPE-1, THP-1, U2OS
918777	123	CAT ...	HHS ...	Ribo-seq	CAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
3201407	93	ATA ...	IDP ...	Ribo-seq	ATA		1	sORFs_org_Human	ncRNA sORF	HEK293
9717	147	CTG ...	LPE ...	Ribo-seq	CTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
1095170	30	CTG ...	LRN ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, MDA-MB-231
410174	99	AGT ...	SHI ...	Ribo-seq	AGT		1	sORFs_org_Human	ncRNA sORF	HCT116

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