Transcript 5975 | MetamORF

Transcript

ID CARD

MetamORF ID

5975

ENST00000541403

Name

LAMTOR1-206

Strand

Biotype

retained_intron

Start-end positions

72098537-72103280

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

HGNC:26068

Aliases

C11orf59,
ENSG00000149357, FLJ20625, HGNC:26068,
LAMTOR1, NCBI:55004, OFF:LAMTOR1,
p18, p27RF-Rho, Pdro,
Ragulator1

Chr 11

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5974	69	GTG ...	VSA ...	Ribo-seq	GTG	moderate	24	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
910883	138	CGG ...	RKL ...	Ribo-seq	CGG		3	sORFs_org_Human	Intronic sORF	BJ, HEK293, Jurkat
3200770	42	CAG ...	QVR ...	Ribo-seq	CAG		1	sORFs_org_Human	Intronic sORF	HEK293
910880	168	ACC ...	TLA ...	Ribo-seq	ACC		1	sORFs_org_Human	Intronic sORF	Jurkat
482884	69	GTG ...	VLL ...	Ribo-seq	GTG		4	sORFs_org_Human	Intronic sORF	BJ, HEK293T, HeLa
103309	132	CTG ...	LLL ...	Ribo-seq	CTG		22	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
408512	33	GAG ...	EYM ...	Ribo-seq	GAG	weak	2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
103303	66	CTG ...	LPS ...	Ribo-seq	CTG		23	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
408516	84	GAG ...	EPN ...	Ribo-seq	GAG		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
2484730	99	CTG ...	LSA ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HeLa
910875	126	CCA ...	PTT ...	Ribo-seq	CCA		1	sORFs_org_Human	Intronic sORF	Jurkat
1440883	138	ATG ...	MEP ...	Ribo-seq	ATG		2	sORFs_org_Human	Intronic sORF	HeLa
910887	48	TCG ...	SDQ ...	Ribo-seq	TCG		1	sORFs_org_Human	Intronic sORF	Jurkat
910864	57	GAC ...	DSQ ...	Ribo-seq	GAC	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
1440888	210	ATG ...	MTT ...	Ribo-seq	ATG		3	sORFs_org_Human	Intronic sORF	HeLa, loayza_puch_2016
910885	147	CGA ...	REE ...	Ribo-seq	CGA		3	sORFs_org_Human	Intronic sORF	BJ, HEK293, Jurkat
103305	126	CTG ...	LDP ...	Ribo-seq	CTG		23	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, Jurkat, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
408514	63	CCT ...	PSA ...	Ribo-seq	CCT		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
103307	129	CTG ...	LLD ...	Ribo-seq	CTG		22	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
482882	66	CTG ...	LLQ ...	Ribo-seq	CTG		4	sORFs_org_Human	Intronic sORF	BJ, HEK293T, HeLa
910878	48	CAA ...	QWS ...	Ribo-seq	CAA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
910866	78	ATC ...	IID ...	Ribo-seq	ATC	moderate	3	sORFs_org_Human	Intronic sORF	HeLa, Jurkat, THP-1
530936	36	CTG ...	LLS ...	Ribo-seq	CTG		17	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
910868	33	CTC ...	LSS ...	Ribo-seq	CTC		1	sORFs_org_Human	Intronic sORF	Jurkat
910870	105	CCG ...	PLA ...	Ribo-seq	CCG		1	sORFs_org_Human	Intronic sORF	Jurkat

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