Transcript 3760 | MetamORF

Transcript

ID CARD

MetamORF ID

3760

ENST00000541371

Name

PRPF19-206

Strand

Biotype

protein_coding

Start-end positions

60898541-60906569

CDS Start-stop positions

-60906382

CDS Relative positions

Sequences

Transcript sequence

TGA ...

Genome browsers

UCSC

Gene

HGNC:17896

Aliases

ENSG00000110107,
HGNC:17896, hPSO4, NCBI:27339,
NMP200, OFF:PRPF19, PRP19,
PRPF19, PSO4, SNEV,
UBOX4

Chr 11

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
907610	72	CAG ...	QCQ ...	Ribo-seq	CAG		1	sORFs_org_Human	sORF	Jurkat
3759	36	CTG ...	LPV ...	Ribo-seq	CTG		16	sORFs_org_Human	sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
1094701	93	CTG ...	LAS ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	HEK293, MDA-MB-231
907612	78	GTT ...	VAQ ...	Ribo-seq	GTT		1	sORFs_org_Human	sORF	Jurkat
8247	60	GTG ...	VSL ...	Ribo-seq	GTG		4	sORFs_org_Human	sORF	HEK293, HEK293T, HeLa
3762	72	CTG ...	LGS ...	Ribo-seq	CTG		10	sORFs_org_Human	sORF	HEK293, HeLa, hES, LCL, RPE-1, U2OS
3764	84	GTG ...	VPA ...	Ribo-seq	GTG		14	sORFs_org_Human	sORF	Brain, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
1440012	33	CTG ...	LWR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	sORF	HeLa, RPE-1
907608	60	TCC ...	SWD ...	Ribo-seq	TCC		1	sORFs_org_Human	sORF	Jurkat
8249	72	ATG ...	MPP ...	Ribo-seq	ATG		5	sORFs_org_Human	sORF	HEK293, HEK293T, HeLa, hES
1094699	84	TTG ...	LCP ...	Ribo-seq	TTG		2	sORFs_org_Human	sORF	HEK293, MDA-MB-231
1596476	189	GTG ...	VAR ...	Ribo-seq	GTG	strong	2	sORFs_org_Human	sORF	BJ, loayza_puch_2016
1049522	72	CTG ...	LCQ ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF	HEK293, MDA-MB-231
8245	54	TTG ...	LPV ...	Ribo-seq	TTG		5	sORFs_org_Human	sORF	HEK293, HEK293T, HeLa
1825328	30	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	HEK293, HeLa

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