Transcript 9355 | MetamORF

Transcript

ID CARD

MetamORF ID

9355

ENST00000539455

Name

CELF1-220

Strand

Biotype

processed_transcript

Start-end positions

47470294-47475457

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

HGNC:2549

Aliases

BRUNOL2,
CELF1, CUG-BP, CUGBP,
CUGBP1, EDEN-BP, ENSG00000149187,
HGNC:2549, hNab50, NAB50,
NAPOR, NCBI:10658, OFF:CELF1

Chr 11

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
917554	267	GAG ...	EGA ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
9361	213	CTG ...	LLQ ...	Ribo-seq	CTG		28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
409974	186	AAT ...	NVV ...	Ribo-seq	AAT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
9363	240	CTG ...	LPQ ...	Ribo-seq	CTG		28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
9357	144	CTG ...	LSK ...	Ribo-seq	CTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
917561	150	ACA ...	TNL ...	Ribo-seq	ACA		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
9371	210	CTG ...	LQM ...	Ribo-seq	CTG		28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
917565	261	GCC ...	ANL ...	Ribo-seq	GCC		1	sORFs_org_Human	ncRNA sORF	Jurkat
9354	180	GTG ...	VSA ...	Ribo-seq	GTG		28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
409981	243	CAC ...	HLP ...	Ribo-seq	CAC		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
9359	255	CTG ...	LFI ...	Ribo-seq	CTG		28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
917592	225	GGT ...	GDQ ...	Ribo-seq	GGT		1	sORFs_org_Human	ncRNA sORF	Jurkat

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