Transcript 412071

Transcript

ID CARD

MetamORF ID

412071

ENST00000539276

Name

ATP2A2-204

Strand

Biotype

protein_coding

Start-end positions

110281681-110347326

CDS Start-stop positions

110281790-110346470

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

HGNC:812

Aliases

ATP2A2,
ATP2B, DAR, ENSG00000174437,
HGNC:812, NCBI:488, OFF:ATP2A2,
SERCA2

Chr 12

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1300225	165	ATG ...	MPL ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
412073	48	TGG ...	WRR ...	Ribo-seq	TGG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
540471	183	GTG ...	VAR ...	Ribo-seq	GTG	strong	14	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HEK293, HEK293T, HeLa, hES, Jurkat, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
925861	87	GCA ...	AHQ ...	Ribo-seq	GCA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3324310	135	ATG ...	MQL ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
12804	54	ATG ...	MAC ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
412070	66	ACG ...	TRT ...	Ribo-seq	ACG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, HEK293, Jurkat
412075	30	ACT ...	TSA ...	Ribo-seq	ACT	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
1831319	39	ATG ...	MNS ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1051659	36	TTG ...	LKK ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231, RPE-1
1520109	84	ATG ...	MTL ...	Ribo-seq	ATG		1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
303771	63	ATG ...	MNL ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
540469	171	CTG ...	LGS ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, guo_2014, HEK293, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
925867	33	TTT ...	FYY ...	Ribo-seq	TTT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
303769	51	ATG ...	MKW ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
110036	75	ATG ...	MTR ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
925858	96	GGA ...	GER ...	Ribo-seq	GGA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3202036	51	CGG ...	RWR ...	Ribo-seq	CGG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
12819	129	ATG ...	MRR ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF

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