Transcript 6826 | MetamORF

Transcript

ID CARD

MetamORF ID

6826

ENST00000538950

Name

SLC37A4-216

Strand

Biotype

protein_coding

Start-end positions

119024351-119030906

CDS Start-stop positions

119024910-119028355

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

HGNC:4061

Aliases

ENSG00000137700,
G6PT1, G6PT2, G6PT3,
GSD1b, GSD1c, GSD1d,
HGNC:4061, NCBI:2542, OFF:SLC37A4,
SLC37A4

Chr 11

ORFs

68 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1730430	192	CTG ...	LGC ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
291050	33	CTG ...	LWS ...	Ribo-seq	CTG		10	sORFs_org_Human	Alternative sORF Upstream	HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
291038	51	TTG ...	LSH ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231, RPE-1
532136	30	ATG ...	MAP ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231, U2OS
1729364	141	CTG ...	LGC ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1730419	129	TTG ...	LLP ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
6839	198	ATG ...	MIV ...	Ribo-seq	ATG		19	sORFs_org_Human	Alternative sORF Upstream	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
409045	57	AAC ...	NCE ...	Ribo-seq	AAC		1	sORFs_org_Human	Alternative sORF Upstream	HCT116
1729351	69	CTG ...	LGC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
291034	54	CTG ...	LTG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
1730421	135	CTG ...	LSL ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1730403	141	GTG ...	VPL ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1730423	156	TTG ...	LPG ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1207923	45	GTG ...	VVR ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative sORF Upstream	HAP1, HEK293T
2322820	51	CTG ...	LYL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
291054	99	GTG ...	VEE ...	Ribo-seq	GTG		9	sORFs_org_Human	Alternative sORF Upstream	HAP1, HEK293, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
533172	84	CTG ...	LAT ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231, RPE-1, U2OS
292440	63	CTG ...	LLM ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231, U2OS
1730401	123	GTG ...	VAP ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
291042	99	CTG ...	LAL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
409049	144	AAT ...	NDC ...	Ribo-seq	AAT		4	sORFs_org_Human	Alternative sORF Upstream	HCT116, HEK293, HeLa, THP-1
1730426	177	TTG ...	LAW ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
291046	45	ATG ...	MLS ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	Alternative Overlapping sORF Upstream	LCL, MDA-MB-231, RPE-1
291040	45	CTG ...	LEL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
2322841	126	TTG ...	LAW ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
291036	36	TTG ...	LAL ...	Ribo-seq	TTG	strong	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231, RPE-1
6831	66	TTG ...	LAG ...	Ribo-seq	TTG		19	sORFs_org_Human	Alternative sORF Upstream	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1207407	192	GTG ...	VVR ...	Ribo-seq	GTG		3	sORFs_org_Human	sORF Upstream	Blood, HAP1, MDA-MB-231
1138666	54	CTG ...	LGG ...	Ribo-seq	CTG	strong	5	sORFs_org_Human	sORF Upstream	HAP1, HEK293, HEK293T, MM1S
533182	60	CTG ...	LML ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, U2OS
6837	117	CTG ...	LGT ...	Ribo-seq	CTG		24	sORFs_org_Human	Alternative sORF Upstream	Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
292442	69	ATG ...	MNL ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231, U2OS
1730415	108	ATG ...	MAW ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1729359	57	GTG ...	VGA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
2322839	105	TTG ...	LPG ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
292444	102	TTG ...	LSP ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231, U2OS
1729367	162	GTG ...	VLA ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
6825	54	CTG ...	LGP ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, U2OS
7600	54	CTG ...	LGP ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, U2OS
1729349	48	TTG ...	LPS ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
6835	108	GTG ...	VRA ...	Ribo-seq	GTG		24	sORFs_org_Human	Alternative sORF Upstream	Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
6841	228	CTG ...	LGP ...	Ribo-seq	CTG		18	sORFs_org_Human	Alternative sORF Upstream	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
532134	78	TTG ...	LCG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, U2OS
1730405	225	TTG ...	LAA ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1207403	168	CTG ...	LVG ...	Ribo-seq	CTG		4	sORFs_org_Human	sORF Upstream	Blood, HAP1, HEK293, MDA-MB-231
2322832	75	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2322836	84	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2322834	78	TTG ...	LLP ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1730407	231	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood
1824022	33	ATG ...	MLY ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
291044	30	TTG ...	LSV ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	Alternative Overlapping sORF Upstream	Blood, HAP1, HeLa, LCL, MDA-MB-231, RPE-1
409047	63	TCT ...	SGN ...	Ribo-seq	TCT		1	sORFs_org_Human	Alternative sORF Upstream	HCT116
533178	54	TTG ...	LDS ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, U2OS
2325273	159	TTG ...	LPR ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1730399	105	TTG ...	LWD ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1730410	192	CTG ...	LEG ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
532138	36	CTG ...	LAT ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231, U2OS
533180	57	ATG ...	MLD ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, U2OS
2322830	57	ATG ...	MAW ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1729355	141	CTG ...	LDP ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
409043	69	GTC ...	VLA ...	Ribo-seq	GTC		1	sORFs_org_Human	Alternative sORF Upstream	HCT116
2325271	120	CTG ...	LGH ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1730417	126	CTG ...	LPS ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1730432	213	GTG ...	VLA ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
291056	111	CTG ...	LGG ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative sORF Upstream	HAP1, HEK293, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
1729353	45	GTG ...	VWH ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
2322818	45	TTG ...	LVS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
6833	75	CTG ...	LCV ...	Ribo-seq	CTG		20	sORFs_org_Human	Alternative sORF Upstream	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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