Transcript 4728 | MetamORF

Transcript

ID CARD

MetamORF ID

4728

ENST00000538595

Name

MACROD1-203

Strand

Biotype

processed_transcript

Start-end positions

64148747-64166057

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

HGNC:29598

Aliases

ENSG00000133315,
HGNC:29598, LRP16, MACROD1,
NCBI:28992, OFF:MACROD1

Chr 11

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1206074	72	TTG ...	LGP ...	Ribo-seq	TTG		5	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293T, HeLa, MDA-MB-231
2316491	171	GTG ...	VPR ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	ncRNA sORF	HeLa, MDA-MB-231
908872	165	ATG ...	MRK ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	Jurkat
9412	159	GTG ...	VKV ...	Ribo-seq	GTG		9	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231
9414	204	CTG ...	LKK ...	Ribo-seq	CTG		14	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
4727	69	CTG ...	LLR ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES
409983	129	GAC ...	DKQ ...	Ribo-seq	GAC		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
1995270	72	GTG ...	VDA ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HeLa, MDA-MB-231
407881	90	CAG ...	QLN ...	Ribo-seq	CAG		1	sORFs_org_Human	ncRNA sORF	HCT116
8643	264	CTG ...	LKG ...	Ribo-seq	CTG		15	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1
4730	120	GTG ...	VEE ...	Ribo-seq	GTG		18	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
908870	45	CGA ...	RHH ...	Ribo-seq	CGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
908875	42	GGA ...	GPE ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
4736	60	CTG ...	LQG ...	Ribo-seq	CTG		9	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HEK293T, HeLa, LCL, RPE-1, U2OS
102584	45	CTG ...	LEV ...	Ribo-seq	CTG		7	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, HEK293, HeLa, hES, HFF
9410	153	GTG ...	VEE ...	Ribo-seq	GTG		10	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231
1995265	78	CTG ...	LEV ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HeLa, MDA-MB-231
407885	36	GAA ...	EDP ...	Ribo-seq	GAA		1	sORFs_org_Human	ncRNA sORF	HCT116
4732	126	GTG ...	VKV ...	Ribo-seq	GTG		17	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
3223171	300	GTG ...	VGG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	ncRNA sORF	HeLa
4734	132	GTG ...	VAV ...	Ribo-seq	GTG		17	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
9408	165	GTG ...	VAV ...	Ribo-seq	GTG		8	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231
407883	96	GAC ...	DKQ ...	Ribo-seq	GAC		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
908877	270	GGC ...	GVF ...	Ribo-seq	GGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
1601548	102	CTG ...	LLR ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	Flp-In_T-REx-293, HeLa, MDA-MB-231
1206072	51	GTG ...	VTS ...	Ribo-seq	GTG	weak	9	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HeLa, MDA-MB-231
102582	39	GTG ...	VDA ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	Brain, HEK293, HeLa, hES
8641	255	CTG ...	LSD ...	Ribo-seq	CTG		16	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1

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