Transcript 866 | MetamORF

Transcript

ID CARD

MetamORF ID

866

ENST00000537776

Name

NUDT5-209

Strand

Biotype

protein_coding

Start-end positions

12167577-12196144

CDS Start-stop positions

12167702-12186291

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

HGNC:8052

Aliases

ENSG00000165609,
HGNC:8052, hYSAH1, NCBI:11164,
NUDT5, OFF:NUDT5, YSA1H

Chr 10

ORFs

60 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
876	111	CTG ...	LLS ...	Ribo-seq	CTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231
94551	57	CTG ...	LYG ...	Ribo-seq	CTG	moderate	19	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
882	135	ATG ...	MMV ...	Ribo-seq	ATG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
895	30	CTG ...	LVK ...	Ribo-seq	CTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
94547	30	ATG ...	MQS ...	Ribo-seq	ATG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, MDA-MB-231, THP-1
1129618	123	ATG ...	MLP ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa
872	84	CTG ...	LAT ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231
891	105	CTG ...	LPE ...	Ribo-seq	CTG		22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
94561	99	ATG ...	MVK ...	Ribo-seq	ATG		22	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, RPE-1
481168	72	CTG ...	LPP ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative sORF Upstream	HEK293, HEK293T, HeLa, MDA-MB-231, MM1S, THP-1
94553	33	TTG ...	LPN ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa, HFF
403976	84	CGA ...	RSV ...	Ribo-seq	CGA	weak	1	sORFs_org_Human	Alternative sORF Upstream	HCT116
272950	33	CTG ...	LYY ...	Ribo-seq	CTG	moderate	16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, guo_2014, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
96301	144	GTG ...	VNF ...	Ribo-seq	GTG		23	sORFs_org_Human	Overlapping sORF Upstream	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MM1S, RPE-1, U2OS
94559	78	CTG ...	LLS ...	Ribo-seq	CTG		20	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, MM1S
96303	39	GTG ...	VAP ...	Ribo-seq	GTG	strong	19	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1
279868	102	CTG ...	LKC ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL
893	123	ATG ...	MTF ...	Ribo-seq	ATG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HEK293T, HeLa, hES, LCL, MM1S, RPE-1, U2OS
405883	57	TAT ...	YFV ...	Ribo-seq	TAT		2	sORFs_org_Human	Alternative sORF Upstream	HCT116, Jurkat
94549	57	ATG ...	MMP ...	Ribo-seq	ATG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, hES, LCL
94565	60	GTG ...	VSR ...	Ribo-seq	GTG	moderate	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
94563	69	GTG ...	VYR ...	Ribo-seq	GTG		23	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
403974	60	TGC ...	CCL ...	Ribo-seq	TGC		5	sORFs_org_Human	Alternative sORF Upstream	BJ, HCT116, HEK293, Jurkat
279870	105	TTG ...	LLK ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL
893411	51	GGT ...	GLF ...	Ribo-seq	GGT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
279874	108	ATG ...	MMP ...	Ribo-seq	ATG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, THP-1
893429	279	TAT ...	YFV ...	Ribo-seq	TAT		1	sORFs_org_Human	sORF Upstream	Jurkat
886	69	CTG ...	LRM ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
880	132	ATG ...	MVK ...	Ribo-seq	ATG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
893417	30	TAC ...	YYT ...	Ribo-seq	TAC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
874	96	TTG ...	LKK ...	Ribo-seq	TTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231
629588	36	ATG ...	MQM ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, MDA-MB-231, THP-1
893409	42	CTA ...	LRS ...	Ribo-seq	CTA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
893432	300	ACA ...	TLL ...	Ribo-seq	ACA		1	sORFs_org_Human	sORF Upstream	Jurkat
1817957	165	TTG ...	LYR ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
893415	114	TCA ...	SFL ...	Ribo-seq	TCA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
279872	105	ATG ...	MPK ...	Ribo-seq	ATG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, THP-1
94555	51	CTG ...	LAT ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa, hES, HFF, LCL
94557	63	TTG ...	LKK ...	Ribo-seq	TTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231
96305	51	GTG ...	VFR ...	Ribo-seq	GTG	weak	15	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, loayza_puch_2016, MDA-MB-231, MM1S, THP-1
893413	60	GGA ...	GRQ ...	Ribo-seq	GGA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
96296	102	ATG ...	MMV ...	Ribo-seq	ATG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
870	66	TTG ...	LPN ...	Ribo-seq	TTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231
884	63	ATG ...	MVS ...	Ribo-seq	ATG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1
272947	48	CTG ...	LKN ...	Ribo-seq	CTG	weak	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1
893427	30	TCC ...	SVL ...	Ribo-seq	TCC		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
897	57	TTG ...	LKK ...	Ribo-seq	TTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
96293	96	GTG ...	VKP ...	Ribo-seq	GTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
878	129	GTG ...	VKP ...	Ribo-seq	GTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
893434	36	GCA ...	APA ...	Ribo-seq	GCA	moderate	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
893425	39	ACC ...	TNG ...	Ribo-seq	ACC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2092631	33	ATG ...	MAN ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, RPE-1
480206	102	ATG ...	MPE ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, HEK293T
893422	33	AAC ...	NPR ...	Ribo-seq	AAC	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
893419	54	AAA ...	KLA ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
868	294	CTG ...	LSL ...	Ribo-seq	CTG		32	sORFs_org_Human	CDS sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
865	57	CTG ...	LFI ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, THP-1, U2OS
480194	54	ATG ...	MPK ...	Ribo-seq	ATG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HEK293T, HeLa, hES
481170	75	CTG ...	LLP ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative sORF Upstream	HEK293, HEK293T, HeLa, MDA-MB-231, MM1S, THP-1
94567	51	TTG ...	LGI ...	Ribo-seq	TTG		24	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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