Transcript 103675

Transcript

ID CARD

MetamORF ID

103675

ENST00000536144

Name

MRE11-206

Strand

Biotype

processed_transcript

Start-end positions

94483770-94493813

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TAC ...

Genome browsers

UCSC

Gene

HGNC:7230

Aliases

ATLD,
ENSG00000020922, HGNC:7230, MRE11,
MRE11A, NCBI:4361, OFF:MRE11

Chr 11

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
409916	219	TGC ...	CGF ...	Ribo-seq	TGC		3	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, Jurkat
2320584	66	GTG ...	VVI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
1320399	129	GTG ...	VLF ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293, RPE-1
408751	126	TGC ...	CGF ...	Ribo-seq	TGC		3	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, Jurkat
1138260	75	CTG ...	LPF ...	Ribo-seq	CTG		5	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, RPE-1
1728450	36	CTG ...	LPR ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES, MDA-MB-231
2546344	99	TTG ...	LST ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HEK293
1139843	168	CTG ...	LPF ...	Ribo-seq	CTG		3	sORFs_org_Human	ncRNA sORF	HEK293, RPE-1
105574	180	TTG ...	LLG ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HEK293
2320581	51	ATG ...	MKI ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
105762	63	GTG ...	VGL ...	Ribo-seq	GTG		14	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HeLa, hES, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2320589	30	GTG ...	VMM ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293, MDA-MB-231
103674	153	TTG ...	LLG ...	Ribo-seq	TTG		5	sORFs_org_Human	ncRNA sORF	Blood, HEK293, hES
912220	33	AAT ...	NEY ...	Ribo-seq	AAT		3	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
1318458	45	TTG ...	LFL ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
917476	186	GTT ...	VFF ...	Ribo-seq	GTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
289751	48	TTG ...	LDL ...	Ribo-seq	TTG	strong	9	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231
1310084	87	ATT ...	IWN ...	Ribo-seq	ATT	moderate	1	sORFs_org_Human	ncRNA sORF	HEK293
1728452	63	GTG ...	VIF ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	ncRNA sORF	Blood, MDA-MB-231
535118	39	TTG ...	LWG ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	U2OS
2546346	39	TTG ...	LWG ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HEK293
1138258	30	TTG ...	LES ...	Ribo-seq	TTG	strong	7	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, MDA-MB-231
912217	63	GAT ...	DRP ...	Ribo-seq	GAT		1	sORFs_org_Human	ncRNA sORF	Jurkat
103677	165	GTG ...	VDF ...	Ribo-seq	GTG		2	sORFs_org_Human	ncRNA sORF	HEK293, hES
1009129	66	CTG ...	LTF ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, RPE-1
289757	45	TTG ...	LGR ...	Ribo-seq	TTG		8	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HeLa, LCL, MM1S, RPE-1, THP-1
912222	93	GTT ...	VFF ...	Ribo-seq	GTT		1	sORFs_org_Human	ncRNA sORF	Jurkat
1138256	75	GTG ...	VHF ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	ncRNA sORF	HEK293, RPE-1
289753	66	TTG ...	LQQ ...	Ribo-seq	TTG	weak	7	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
1320401	126	TTG ...	LFS ...	Ribo-seq	TTG		2	sORFs_org_Human	ncRNA sORF	HEK293, RPE-1
2546342	48	TTG ...	LTD ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HEK293
289749	30	ATG ...	MQS ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HeLa, Jurkat, LCL, MDA-MB-231

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