Transcript 123 | MetamORF

Transcript

ID CARD

MetamORF ID

123

ENST00000536055

Name

ATAD3A-207

Strand

Biotype

protein_coding

Start-end positions

1512530-1534687

CDS Start-stop positions

1516044-1534072

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:25567

Aliases

ATAD3A,
ENSG00000197785, FLJ10709, HGNC:25567,
NCBI:55210, OFF:ATAD3A

Chr 1

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
102558	39	ATG ...	MLS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
218623	39	ATG ...	MFL ...	Ribo-seq	ATG		12	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231, U2OS
913187	111	TGG ...	WSW ...	Ribo-seq	TGG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1825987	39	ATG ...	MKR ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	HeLa
913111	117	TCA ...	SCW ...	Ribo-seq	TCA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3224676	81	CTG ...	LLG ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
852224	243	GGC ...	GGR ...	Ribo-seq	GGC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
101816	78	TTG ...	LGS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa
122	66	ATG ...	MTA ...	Ribo-seq	ATG	weak	7	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
852233	234	GCA ...	APS ...	Ribo-seq	GCA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
102560	36	CTG ...	LSS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
168398	48	TTG ...	LTS ...	Ribo-seq	TTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, U2OS
1739642	54	ATG ...	MRW ...	Ribo-seq	ATG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
912731	66	CAG ...	QPR ...	Ribo-seq	CAG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat

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