Transcript 5855 | MetamORF

Transcript

ID CARD

MetamORF ID

5855

ENST00000535993

Name

CCND1-202

Strand

Biotype

retained_intron

Start-end positions

69641231-69643317

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

HGNC:1582

Aliases

BCL1,
CCND1, D11S287E, ENSG00000110092,
HGNC:1582, NCBI:595, OFF:CCND1,
PRAD1, U21B31

Chr 11

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5854	69	CTG ...	LPS ...	Ribo-seq	CTG		19	sORFs_org_Human	Intronic sORF	BJ, Brain, guo_2014, HEK293, HeLa, hES, HFF, loayza_puch_2016, RPE-1, U2OS
1137926	33	CTG ...	LEV ...	Ribo-seq	CTG		3	sORFs_org_Human	Intronic sORF	BJ, HEK293, HFF
408452	42	ACC ...	TWM ...	Ribo-seq	ACC		1	sORFs_org_Human	Intronic sORF	HCT116
103197	132	CTG ...	LKA ...	Ribo-seq	CTG		22	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HCT116, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
103199	102	GTG ...	VSY ...	Ribo-seq	GTG		19	sORFs_org_Human	Intronic sORF	BJ, Brain, guo_2014, HEK293, HeLa, hES, HFF, loayza_puch_2016, RPE-1, U2OS
1596973	270	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	BJ, loayza_puch_2016
1596968	186	CTG ...	LRA ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	BJ, loayza_puch_2016
1301660	288	CCA ...	PAP ...	Ribo-seq	CCA		4	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, THP-1
408447	123	GAG ...	EET ...	Ribo-seq	GAG		1	sORFs_org_Human	Intronic sORF	HCT116
2616502	174	CCC ...	PDA ...	Ribo-seq	CCC		2	sORFs_org_Human	Intronic sORF	HeLa, THP-1
1596977	222	CTG ...	LPS ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	BJ, loayza_puch_2016
1508356	42	ATG ...	MPT ...	Ribo-seq	ATG	weak	7	sORFs_org_Human	Intronic sORF	BJ, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
1596980	105	GTG ...	VRG ...	Ribo-seq	GTG		2	sORFs_org_Human	Intronic sORF	BJ, loayza_puch_2016
530758	210	ATG ...	MGG ...	Ribo-seq	ATG		4	sORFs_org_Human	Intronic sORF	BJ, loayza_puch_2016, U2OS
1508353	276	CTG ...	LRS ...	Ribo-seq	CTG		8	sORFs_org_Human	Intronic sORF	BJ, HeLa, hES, HFF, loayza_puch_2016, RPE-1
103201	84	GTG ...	VQK ...	Ribo-seq	GTG		19	sORFs_org_Human	Intronic sORF	BJ, Brain, guo_2014, HEK293, HeLa, hES, HFF, loayza_puch_2016, RPE-1, U2OS
103195	144	CTG ...	LRA ...	Ribo-seq	CTG		21	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
103193	147	GTG ...	VLR ...	Ribo-seq	GTG		21	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
1508351	279	GTG ...	VLR ...	Ribo-seq	GTG		8	sORFs_org_Human	Intronic sORF	BJ, HeLa, hES, HFF, loayza_puch_2016, RPE-1
103191	198	GTG ...	VET ...	Ribo-seq	GTG		21	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
1596975	231	CTG ...	LAA ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	BJ, loayza_puch_2016
530760	135	CTG ...	LRG ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
103189	210	CTG ...	LCC ...	Ribo-seq	CTG		23	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HEK293, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
2616504	150	TCC ...	SCR ...	Ribo-seq	TCC		2	sORFs_org_Human	Intronic sORF	HeLa, THP-1
530762	120	GTG ...	VRG ...	Ribo-seq	GTG	moderate	8	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, hES, loayza_puch_2016, MDA-MB-231, U2OS
1301663	186	CGC ...	RRA ...	Ribo-seq	CGC		1	sORFs_org_Human	Intronic sORF	BJ

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