Transcript 3726 | MetamORF

Transcript

ID CARD

MetamORF ID

3726

ENST00000535217

Name

CCDC86-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

60842145-60851046

CDS Start-stop positions

-60842705

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

HGNC:28359

Aliases

CCDC86,
ENSG00000110104, HGNC:28359, MGC2574,
NCBI:79080, OFF:CCDC86

Chr 11

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
907570	123	GAC ...	DSQ ...	Ribo-seq	GAC		1	sORFs_org_Human	NMD sORF	Jurkat
3728	75	GTG ...	VRR ...	Ribo-seq	GTG		18	sORFs_org_Human	NMD sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1, U2OS
3725	105	CTG ...	LNP ...	Ribo-seq	CTG		12	sORFs_org_Human	NMD sORF	BJ, Blood, HAP1, HEK293, HeLa, MDA-MB-231, MM1S, RPE-1, U2OS
907572	117	CAG ...	QST ...	Ribo-seq	CAG		1	sORFs_org_Human	NMD sORF	Jurkat
3738	150	GTG ...	VTG ...	Ribo-seq	GTG		23	sORFs_org_Human	NMD sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
3200353	195	CGG ...	RGQ ...	Ribo-seq	CGG		1	sORFs_org_Human	NMD sORF	HEK293
907564	93	CCA ...	PRA ...	Ribo-seq	CCA		1	sORFs_org_Human	NMD sORF	Jurkat
3730	48	GTG ...	VFS ...	Ribo-seq	GTG		20	sORFs_org_Human	NMD sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1
528411	288	GTG ...	VCS ...	Ribo-seq	GTG		10	sORFs_org_Human	NMD sORF	BJ, Blood, HAP1, HEK293, HeLa, MDA-MB-231, MM1S, RPE-1, U2OS
482172	39	ATG ...	MSR ...	Ribo-seq	ATG	moderate	13	sORFs_org_Human	NMD sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1
907574	162	GCT ...	AGE ...	Ribo-seq	GCT		2	sORFs_org_Human	NMD sORF	HEK293, Jurkat
407554	33	CGA ...	RVW ...	Ribo-seq	CGA		2	sORFs_org_Human	NMD sORF	HCT116, Jurkat
907568	30	GCC ...	ASK ...	Ribo-seq	GCC		1	sORFs_org_Human	NMD sORF	Jurkat
907560	234	GAT ...	DHP ...	Ribo-seq	GAT		1	sORFs_org_Human	NMD sORF	Jurkat
528413	276	CTG ...	LAW ...	Ribo-seq	CTG		10	sORFs_org_Human	NMD sORF	BJ, Blood, HAP1, HEK293, HeLa, MDA-MB-231, MM1S, RPE-1, U2OS
3200351	51	AAA ...	KVF ...	Ribo-seq	AAA		1	sORFs_org_Human	NMD sORF	HEK293
3740	84	TTG ...	LNK ...	Ribo-seq	TTG		24	sORFs_org_Human	NMD sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
907558	138	CCC ...	PRI ...	Ribo-seq	CCC		1	sORFs_org_Human	NMD sORF	Jurkat
907562	207	GCT ...	AWS ...	Ribo-seq	GCT		1	sORFs_org_Human	NMD sORF	Jurkat
482165	213	GTG ...	VQA ...	Ribo-seq	GTG		11	sORFs_org_Human	NMD sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, MDA-MB-231, MM1S, RPE-1, U2OS
907566	150	AAG ...	KTY ...	Ribo-seq	AAG		1	sORFs_org_Human	NMD sORF	Jurkat
3734	222	CTG ...	LTP ...	Ribo-seq	CTG		26	sORFs_org_Human	NMD sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
482170	60	CTG ...	LAP ...	Ribo-seq	CTG		12	sORFs_org_Human	NMD sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1
3732	228	CTG ...	LEL ...	Ribo-seq	CTG		26	sORFs_org_Human	NMD sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
907556	231	CGA ...	RVE ...	Ribo-seq	CGA		1	sORFs_org_Human	NMD sORF	Jurkat
3742	30	GTG ...	VWK ...	Ribo-seq	GTG		14	sORFs_org_Human	NMD sORF	BJ, HAP1, HEK293, HeLa, hES, MM1S, RPE-1, U2OS

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