Transcript 3108 | MetamORF

Transcript

ID CARD

MetamORF ID

3108

ENST00000534710

Name

CAT-205

Strand

Biotype

processed_transcript

Start-end positions

34470714-34472059

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

HGNC:1516

Aliases

CAT,
ENSG00000121691, HGNC:1516, NCBI:847,
OFF:CAT

Chr 11

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
407198	39	GGA ...	GSH ...	Ribo-seq	GGA	weak	1	sORFs_org_Human	ncRNA sORF	HCT116
105768	96	CTG ...	LDK ...	Ribo-seq	CTG		23	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
284294	30	TTG ...	LAA ...	Ribo-seq	TTG	moderate	18	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
634241	84	TTG ...	LCS ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	ncRNA sORF	THP-1
284288	114	TTG ...	LHL ...	Ribo-seq	TTG		4	sORFs_org_Human	ncRNA sORF	Blood, HAP1, LCL, THP-1
634239	99	ATG ...	MRF ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	ncRNA sORF	Blood, THP-1
3110	63	CTG ...	LTT ...	Ribo-seq	CTG		7	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, LCL, MDA-MB-231, THP-1
407196	63	GCG ...	AIH ...	Ribo-seq	GCG	moderate	2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
3107	75	CTG ...	LRS ...	Ribo-seq	CTG		9	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, THP-1
284292	48	GTG ...	VQS ...	Ribo-seq	GTG	weak	22	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1439689	84	CTG ...	LDK ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HeLa

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